Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01329 ATGGCCGCATCTCTATCTTCTGTTATCCATATCTACTTTGTTGACACTAAAACAACACGAACAAGATTTAGTATCACAACTCCAACCCTAAAAAATCACAGAAGATTTATCACCAGTTGTTCCAAATCAAAATCATCCATTCCAGATGACCAAAAAAACTCTTCTTTATCCGAACAACTCGTTTCTCTTTCCAATACAACCTTATCCACTCACCCAGAAGACCAAGCCCATGTTTTTTCAAAGCCAAAACCCACATGGATCAACCCCACTAAGGCTAAGCGTCCTGTGCTCTCTCACCAGAGACACAAACGCTCTTCTGTATCATACAATCCACATTTGAGAGAATTTCAACGTTTTGCTTCAAAATTGAACAATTGTGATGTCTCTTCCGAAGCCGATTTCGTTGCTTGTTTGGAAGAAATTCCGAGTTCCCTTACAAGAGAAAATGCTCTCTTGGTGCTCAATAATTTGAAGCCATGGCAGAAGACTTACAAATTTCTTGATTGGGTCAAGACCAATAATTTGCTTCCTATGGAAACCATATTCTACAATGTTACAATGAAGGCTTTGAGGTTTGGGAGACAGTTTGGGATAATTGAAGAGCTTGCACACCAGATGATTGATAATGGAGTTGAATTGGATAACATCACTTATTCCACCATTATATCATGTGCTAAGAAGTGCAACCTTTTCGACAAAGCTGTGCATTGGTTTGAGAGGATGTATAAGACTGGTTTGATGCCGGATGAGGTAACTTACTCTGCTATTTTAGATGTTTATGCTAGATTAGGTAAAGTTGAAGAGGTTGTTAGTTTGTATGAGAGAGGGAGAGCAACTGGGTGGAAGCCTGATCCCATCACATTTTCTGTGTTGGGGAAGATGTTTGGAGAGGCTGGGGATTATGATGGTATTAGATATGTTTTGCAAGAGATGAAATCTCTTGGAGTGCAGCCTAATTTAGTTGTGTATAATACTTTGTTGGAAGCAATGGGAAAGGCTGGGAAGCCAGGGTTTGCGAGGAGTCTGTTTGAAGAAATGATTGACTCAGGGATAGCCCCGAATGAGAAGACTCTAACAGCAGTAATTAAGATATATGGAAAGGCTAGATGGTCTAGAGATGCTCTAGAATTGTGGAAACGGATGAAGGAAAACGGTTGGCCTATGGATTTTATTTTGTATAATACATTATTGAATATGTGTGCAGATGTTGGATTAGTGGAAGAAGCTGAAACTCTGTTCGGGGATATGAAACAGTCTGAGTATTGCCAGCCAGATAGTTGGAGTTACACGGCTATGCTCAACATATATGGAAGTCAAGGAGATGTGGATAAGGCAATGAAATTGTTTGAAGAGATGTCTAAGCTTGGTATTGAACTCAATGTAATGGGGTGTACTTGTTTGATCCAGTGTTTGGGAAAGGCCATGCAAATTGATGATTTGGGTAGCAAGGATGAGGAAAAAGTTCTTGCTTGTTTGCAACGAGCTAACCCAAAATTAGTTGCTTTTATTCAACTTATTGTAGACGAGGAAACTAGTTTTGAGACCGTTAAGGAAGAGTTTAAGAGTATCATGACCAATGCTGTGGTTGAGattgcatctttcaagttttga 1611 0.3917 MAASLSSVIHIYFVDTKTTRTRFSITTPTLKNHRRFITSCSKSKSSIPDDQKNSSLSEQLVSLSNTTLSTHPEDQAHVFSKPKPTWINPTKAKRPVLSHQRHKRSSVSYNPHLREFQRFASKLNNCDVSSEADFVACLEEIPSSLTRENALLVLNNLKPWQKTYKFLDWVKTNNLLPMETIFYNVTMKALRFGRQFGIIEELAHQMIDNGVELDNITYSTIISCAKKCNLFDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVVSLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSRDALELWKRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFGDMKQSEYCQPDSWSYTAMLNIYGSQGDVDKAMKLFEEMSKLGIELNVMGCTCLIQCLGKAMQIDDLGSKDEEKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKSIMTNAVVEIASFKF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01329 536 PANTHER OS03G0856100 PROTEIN 482 530 - -
Car07g01329 536 Pfam PPR repeat 392 419 IPR002885 -
Car07g01329 536 Pfam PPR repeat 216 243 IPR002885 -
Car07g01329 536 Pfam PPR repeat family 424 472 IPR002885 -
Car07g01329 536 Pfam PPR repeat family 318 363 IPR002885 -
Car07g01329 536 Pfam PPR repeat family 248 291 IPR002885 -
Car07g01329 536 SUPERFAMILY HCP-like 231 457 - -
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Car07g01329 536 PANTHER OS03G0856100 PROTEIN 31 480 - -
Car07g01329 536 Gene3D Tetratricopeptide repeat domain 275 370 IPR011990 GO:0005515
Car07g01329 536 Gene3D Tetratricopeptide repeat domain 371 529 IPR011990 GO:0005515
Car07g01329 536 PANTHER OS03G0856100 PROTEIN 482 530 - -
Car07g01329 536 PANTHER OS03G0856100 PROTEIN 31 480 - -
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Car07g01329 536 Gene3D Tetratricopeptide repeat domain 120 274 IPR011990 GO:0005515
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 293 319 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 428 461 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 321 355 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Car07g01329 536 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Car07g01329 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01329 183 502 Glycosyltransferase AT1G05670 25.697 8.98e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01329 - - gmx:100780994 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01329 07 12264760 12267140 Car07g01329 07 12264760 12267140 ECH