Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01315 ATGGCAGTTAGGTTGAAACATGCATGGACATGCAGCAGCAGACAATGGTCGAAGTCCGAGGAACAACTCTTGTCGGCGCTTCAATCATGCGACGGAATCAAACAGTTCAACCAAGTTCACACCCAACTCATCCTCCACAATCTCTTTCAACACCCTTTTGTCGCCACCACAGCCATCAAGAAACTCTCCTCCAATCCACGCACCACCCCACGCGCCACTTCCCTCTTCGACCAACTCCACCATCCCGACGCTTTTCTTTGCAACACCATCATCCGTTCATATGTTCGCACTTCCAATTTCAACGCCGCTTTCCATTTCTATTACCACAAAATGATTGCCAGGTGGGTCCCACCCAATCACTACACTTTCCCTCTCATACTCAAACTCTGCTCCGATTGCGGGTCCCAACGAGAAGGTGAAAAGGCTCACGATCGAGTAATCAAATTCGGGTTCGATTCCGATTTGTTCGTCTTGAACTCGCTGATCCGAATGTACTCCGTTTTCGGGAGAATTGACTATGCCCGAACACTGTTTGATGCGAGTTATGTTTTGGATTTGGTGAGTTACAACACCATGATCGATGGGTATGTGAAGAATGGTGAAATTGGTGTTGCACGGAAACTGTTTGATGAAATGCCTCAAAGAGATGTTTTTAGTTGGAATTGTATGATAGCTGGACACGTGGCGGTTGGGGATTTGGTTGCTGCAAATGAACTGTTTGAAATAATGCCTGATAGAGATGTTGTGTCTTGGAACTGTATGATAGATGGGTGTGTAAGGGATGGGAATGTTTCTCTTGCTCTTGAGTTTTTCAATCGAATGAAAGAGGTTGTTATTAGGAATGTGGTTTCATGGAATTCGATGTTGGCATTGCACGTGCGGATGAAGAATTTCGGTGAGTGTTTGGGGTTGTTTGAGAGAATGATGGAAAGTGGGGAGGCTATGCCAAATGAGGCTACTTTGGTGAGTGTTCTCACTGCTTGTGCAAATTTAGGGAAGCTGAGTTTGGGTTTGTGGGTTCATTCTTACATTAAGAGTCATGATATTAAACTTGATGTCTTGCTTGAAACTTGTCTTCTTACGATGTATGCAAAATGTGGGGCTATGGATTTAGCAAGAGATGTTTTTGATGAGATGCCGGTGAAAAGCATCGTGTCATGGAACTCTATGATCATGGGGTATGGATTGCATGGAAATGGGGTGAAAGCTCTTGAAATGTTCTCGGAGATGGAGAAGGCGGACCAGAAGCCAAATGATGCTACCTTTGTTTGTGTGTTGTCTGCTTGTACACATGCTGGAATGGTCATGGAGGGTTGGTGGTACTTCGATCTCATGCGTCATGTTTACAAGATTCAACCCAAGGTTGAGCACTATGGTTGCATGGTTGACCTCCTTGCTCGAGCTGGTTTTGTGAAGAATTCGCAAGAGCTTATAGAAAAGGTCTCTGTAAAAGGTGGATCTGCTTTGTGGGGTGCACTACTTTCTGGATGTAGGACTCACTTGGACTCGGAACTTGGGGAGAATGTAGCTAAGAGACTTGCTGAGTTGGAGCCACTGGATATTGGTCCTTATATCTTGCTGTCAGATATATATGCTGCTCAAGGGAGATGGGGAGATGTTGAACGTGTGAGATTGATGATGATAGAAAAAGGGTTACAAAAAGAAGCAGCATCCAGCTTGGTTCATCTTGAAGATTTCCAATCTAAGTGTATTGTTAATAAATGA 1725 0.4446 MAVRLKHAWTCSSRQWSKSEEQLLSALQSCDGIKQFNQVHTQLILHNLFQHPFVATTAIKKLSSNPRTTPRATSLFDQLHHPDAFLCNTIIRSYVRTSNFNAAFHFYYHKMIARWVPPNHYTFPLILKLCSDCGSQREGEKAHDRVIKFGFDSDLFVLNSLIRMYSVFGRIDYARTLFDASYVLDLVSYNTMIDGYVKNGEIGVARKLFDEMPQRDVFSWNCMIAGHVAVGDLVAANELFEIMPDRDVVSWNCMIDGCVRDGNVSLALEFFNRMKEVVIRNVVSWNSMLALHVRMKNFGECLGLFERMMESGEAMPNEATLVSVLTACANLGKLSLGLWVHSYIKSHDIKLDVLLETCLLTMYAKCGAMDLARDVFDEMPVKSIVSWNSMIMGYGLHGNGVKALEMFSEMEKADQKPNDATFVCVLSACTHAGMVMEGWWYFDLMRHVYKIQPKVEHYGCMVDLLARAGFVKNSQELIEKVSVKGGSALWGALLSGCRTHLDSELGENVAKRLAELEPLDIGPYILLSDIYAAQGRWGDVERVRLMMIEKGLQKEAASSLVHLEDFQSKCIVNK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01315 574 Pfam PPR repeat 158 179 IPR002885 -
Car07g01315 574 Pfam PPR repeat 283 312 IPR002885 -
Car07g01315 574 Pfam PPR repeat 187 216 IPR002885 -
Car07g01315 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Car07g01315 574 PANTHER - 278 565 - -
Car07g01315 574 PANTHER - 23 275 - -
Car07g01315 574 PANTHER OS01G0913400 PROTEIN-RELATED 278 565 - -
Car07g01315 574 PANTHER OS01G0913400 PROTEIN-RELATED 23 275 - -
Car07g01315 574 TIGRFAM PPR: pentatricopeptide repeat domain 187 217 IPR002885 -
Car07g01315 574 TIGRFAM PPR: pentatricopeptide repeat domain 86 119 IPR002885 -
Car07g01315 574 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Car07g01315 574 TIGRFAM PPR: pentatricopeptide repeat domain 283 314 IPR002885 -
Car07g01315 574 TIGRFAM PPR: pentatricopeptide repeat domain 249 276 IPR002885 -
Car07g01315 574 TIGRFAM PPR: pentatricopeptide repeat domain 218 249 IPR002885 -
Car07g01315 574 Pfam E motif 500 559 IPR046848 -
Car07g01315 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 118 IPR002885 -
Car07g01315 574 Gene3D Tetratricopeptide repeat domain 105 240 IPR011990 GO:0005515
Car07g01315 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Car07g01315 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Car07g01315 574 Gene3D Tetratricopeptide repeat domain 334 450 IPR011990 GO:0005515
Car07g01315 574 Pfam PPR repeat family 246 276 IPR002885 -
Car07g01315 574 Pfam PPR repeat family 382 429 IPR002885 -
Car07g01315 574 Gene3D Tetratricopeptide repeat domain 241 333 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01315 Car-Chr7 12092802 12095195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01315 107 565 Glycoside Hydrolase AT3G49170 31.924 3.19e-72 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01315 - - gmx:100799232 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01315 07 12092802 12095195 Car07g01315 07 12092802 12095195 ECH