Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00948 ATGAACATTAACAAGAGGGTTGAAGAAGGATTGGTTTCATTGTTGGGCAAATGCAACAGCACCACCCTCAAAACCACTAAGCAAATTCACGCTCATCTCTACGTTACAGGCCTTCACACTAACCCTTTCTTCTTCGGCAAACTTCTTCTCCACTGCGCCTCATCCATCTCCGACCATGCTCTCCACTACTCTCTCCGTCTCTTCCAACACTTCCCCAACCCCGACACCTTCATGTACAACACCCTCATTCGTTCACTTTCTCACTCTTCCACCCCTCTTACTTCCCTCCAACCCTTCATCCAATTGCTTCGTCACCCCACCCTCTTCCCCGATAGCTTCTCCTTCGCCTTTGCACTCAAAGGGATCGCAAACTACGGTCACTTGAATAAATCCGGCATTCAGCTGCATTCTCAGGCTTTTCGTCATGGATTTGATTCCCATATATTTGTTGGAACTAcattgattagtatgtatgccgaatgtgggtgttatgagtctgcaacaaaggtatttgaggaaatgcctgaaccgaatgttgttgcgtggaatgcggtTGTTACTGCTTCTTTTAGGTGTGGGGATGTGGAGGGTGCGTGGGGTGTGTTTCAGCGTATGCCCATTAGGAATTTGACTTCTTGGAATGTGATGCTTGCTGGTTATGTTAAAGCTAGTGAGCTTGGGTTGGCAAGAAGAGTTTTTTCTCAAATGACGATGAGAGATGATGTTTCTTGGAGTACTATGATTGTTGGCTTTTCTCAAGGTGGTTCTTTTGATGAGGCTTTTGGGTTTTTCAGGGAGTTGAGGCGGGAGGGGATTAGGCCGAGTGAAGTTAGTCTCACTGGGGTGTTGTCTGCTTGTGCACAAGCTGGGGCGTTTGAGTTTGGTAAGATTTTACATGGGTTTATGGAGAAAGCTGGGTTTCTTTGTATTGTTTCGGTGAATAATGCTTTAATAGATACTTACTCCAAGTGCGGAAATGTTGATATGGCTAAGTCGGTCTTTCAAAATATGTCTGCGGCTAAGTGCGTCGTGTCTTGGACATCGATGATAGCAGCACTTGCAATGCACGGTCGTGGAGATGAGGCGATTCAGGTTTTTTATGAGATGGAAGAGTCTGGAGTTAGGCCGGACGGTGTCACGTTCATATCTCTCCTTTAtgcttgtagccatagtggtttggttcagcaagggtgtgatttattttctaagatgacaaatttgtatgggattgaacctgcagctgagcattatggttgtatggttgatctATATGGTCGAGCTGCTAGGTTGCAGGAGGCTTATGAGTTTATATGCCAAATGCCAATTCCACCTAATGCAATCATTTGGAGGACCCTCCTTGGGACTTGTAGCCTTCATGGAAATATTGAATTGGCAGAGCTTGTAAAAGCAAGGCTTGCTGAAATGGATCCAAACAACTCCAGTGACCATGTACTGCTCTCGAATGTTTATGCGGTTGCAGGGAAATGGAAGGATGTTGCTGGCATAAGAAGAACAATGATTGAACATAGCATGAAAAAGACTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCATTTATCGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCCCATGATAAACTGAGGGAAATAATGTTAAGACTCAGAACAGAAGAAGGTTATGCGCCCCAGGTAAGAAGTGTCTTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTGTCCAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGATTAGCAAAACTTCCTAAAGGAAGGATTTTAAGAATAGTAAAGAACCTGAGGGTTTGTGGAGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTTTATCAAGTAGAAATCATTGTGAGGGATAGAAGTCGCTTTCACTCATTCAAAAATGGATTTTGTTCCTGCAGAGATTACTGGTGA 1953 0.3953 MNINKRVEEGLVSLLGKCNSTTLKTTKQIHAHLYVTGLHTNPFFFGKLLLHCASSISDHALHYSLRLFQHFPNPDTFMYNTLIRSLSHSSTPLTSLQPFIQLLRHPTLFPDSFSFAFALKGIANYGHLNKSGIQLHSQAFRHGFDSHIFVGTTLISMYAECGCYESATKVFEEMPEPNVVAWNAVVTASFRCGDVEGAWGVFQRMPIRNLTSWNVMLAGYVKASELGLARRVFSQMTMRDDVSWSTMIVGFSQGGSFDEAFGFFRELRREGIRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKSVFQNMSAAKCVVSWTSMIAALAMHGRGDEAIQVFYEMEESGVRPDGVTFISLLYACSHSGLVQQGCDLFSKMTNLYGIEPAAEHYGCMVDLYGRAARLQEAYEFICQMPIPPNAIIWRTLLGTCSLHGNIELAELVKARLAEMDPNNSSDHVLLSNVYAVAGKWKDVAGIRRTMIEHSMKKTPGWSMIEIDKVIYRFVAGEKPNEVTEEAHDKLREIMLRLRTEEGYAPQVRSVLHDIEEEEKEDSVSKHSEKLAAAFGLAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKNGFCSCRDYW 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00948 650 Gene3D Tetratricopeptide repeat domain 295 394 IPR011990 GO:0005515
Car07g00948 650 Gene3D Tetratricopeptide repeat domain 201 294 IPR011990 GO:0005515
Car07g00948 650 Pfam PPR repeat family 240 287 IPR002885 -
Car07g00948 650 Pfam PPR repeat family 341 389 IPR002885 -
Car07g00948 650 Pfam DYW family of nucleic acid deaminases 558 650 IPR032867 GO:0008270
Car07g00948 650 TIGRFAM PPR: pentatricopeptide repeat domain 315 345 IPR002885 -
Car07g00948 650 TIGRFAM PPR: pentatricopeptide repeat domain 212 243 IPR002885 -
Car07g00948 650 TIGRFAM PPR: pentatricopeptide repeat domain 242 276 IPR002885 -
Car07g00948 650 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Car07g00948 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Car07g00948 650 PANTHER - 16 591 - -
Car07g00948 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Car07g00948 650 PANTHER OS01G0913400 PROTEIN-RELATED 16 591 - -
Car07g00948 650 Pfam E motif 459 521 IPR046848 -
Car07g00948 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Car07g00948 650 Gene3D Tetratricopeptide repeat domain 395 587 IPR011990 GO:0005515
Car07g00948 650 Gene3D Tetratricopeptide repeat domain 18 176 IPR011990 GO:0005515
Car07g00948 650 Pfam PPR repeat 180 206 IPR002885 -
Car07g00948 650 Pfam PPR repeat 416 440 IPR002885 -
Car07g00948 650 Pfam PPR repeat 315 339 IPR002885 -
Car07g00948 650 Pfam PPR repeat 152 176 IPR002885 -
Car07g00948 650 Pfam PPR repeat 212 238 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00948 Car-Chr7 8365128 8367080 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00948 58 650 Glycoside Hydrolase AT3G49170 33.385 1.57e-116 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00948 - - lja:Lj4g3v1632020.2 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00948 07 8365128 8367080 Car07g00948 07 8365128 8367080 ECH