Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00941 ATGGGAGAAGTTTTAAAGAGAAGGACTCAAACACCAAATGGCGCCTGTTTGGTCCTCATGCTCAAACCGTTTTGTTCTCGCCGCAACCAAACTTCTTTCGCTGCCGCCACTTTCACTCTCATTCATCTCCATCACTATAATACCATTCCTCAACCATATCCACACCACAAATATTCTGTTATTTCTGCCATTAAATCTAGTTCCCATAAGACCCATTTGCTCCAAATCCATGCTCACATTCTCACCACAACTCTCATTCAACACCCCACTATTTCTCTTCATTTCTTATCCCGTTTAGCTTTATCTGGTCCCTTGCAAGATCCCACCTATTCTCACCGTTTCTTTGACCAAATCAGCAACCCTTTTGTTTTCCACTACAACACCATGATCAGGGCTTATTCCTTGAGCGACTCGCCTCAAAAGGCTCTTTTTTTATATCGAGATATGAGAAGAAAAGGCATTGCTTCTGACCCTTTATCGTCTTCCTTTGCTGTTAAGTCTTGTATCAGATTTCTGTATCTTTTTGGAGGGCTTCAGGTTCATTGCAATGTCCTTAAAGAGGGGCACCAATCAGATACACTCTTGCTCACTTCTCTCATGGATTTGTATTCACAATGCCAGAGATGTGACGATGCTTCTAAGGTGTTCGATGAAATTCCCCAGAAAGATACTGTTGCTTGGAATGTGATGATATCTTGCTGTATTCGAAATAATCGGACCCGGGATGCTTTGAGCTTGTTTGATGTTATGCAGACTGAAAGCTATCAATGTGAGCCTGATAATGTTACTTGTTTACTTCTTCTTCAAGCATGTGCTCGTTTGAATGCCTTGGAATTTGGTGAACGGATTCATAGTTATATTACGGAACGTGGCTATGGGGGTGTTCTCAATTTGTCTAATTCTCTCATATCAATGTATTCGCGGTGTGGTTGTTTAGATAAGGCTTATGAGGTTTTTATGGGAATGGAGAACAAAACTGTGATTTCATGGAGTGCAATGATATCTGGTTTGGCAGTGAATGGATATGGGAGAGAAGCTATTGAAGCGTTTGAAGAGATGCAGAGAAATGGCATTCGGCCTGATGATCATACATTCACGGGCATCCTTTCTGGTTGCAGTCATTCCAGATTGTTAGATGAGGGAATGTCGTTTTTTGACCGAATGATCTCAGAGTTTAGGATAACTCCAGCTATCCACCATTATGGCTGCATGGTTGATCTCTTTGGCCGTGCAGGCTTACTTGATAAGGCGTACCAGCTTATTACGTCGATGGAGGTAAAGCCAGATTCCACAGTTTGGAGGACCTTGCTTGGTGCTTGCAGAATTCATGGTGATGTTGCACTAGGTGAACGAGTTATTGGACATTTGATTGAATTGAAAGCTCAAGAAGCTGGAGATTATGTTTTGCTTCTGAATATTTATTCTTCAGCTGGACAGTGGGAAAAGGTGGCAGAAGTGAGAAAACTAATGAGAGAAAAATCAATCCAAACCACACCTGGTTGTAGCACAATTGAACTGAAAGGAGTTGTACACGAGTTTGTTGTGGATGATATTTCACATTCAAAAATGGTTGAACTTTATCACACACTAGATGAGATCAATAAGCAGCTGAAGATAGCTGGTTATGTTGTTGAACTTTCATCTGAACTACATAAGATAGATGACAAAGAAAAATGTTATGCACTCTCTTATCATAGCGAAAAACTAGCTATTGCTTTTGGGGTTCTTGCTACTCCACCTGGCACGACATTGAGAGTGGCCTCTAATCTCCGCGTATGTGTCGATTGCCACAATTTTCTGAAACTTTTTTCTGCAGTTTACAACCGTGATGTAACTCTCAGAGACCATAAACGGTTTCACCACTTCCGCGGAGGGCAATGCTCCTGTAGTGACTATTGGTAG 1902 0.4154 MGEVLKRRTQTPNGACLVLMLKPFCSRRNQTSFAAATFTLIHLHHYNTIPQPYPHHKYSVISAIKSSSHKTHLLQIHAHILTTTLIQHPTISLHFLSRLALSGPLQDPTYSHRFFDQISNPFVFHYNTMIRAYSLSDSPQKALFLYRDMRRKGIASDPLSSSFAVKSCIRFLYLFGGLQVHCNVLKEGHQSDTLLLTSLMDLYSQCQRCDDASKVFDEIPQKDTVAWNVMISCCIRNNRTRDALSLFDVMQTESYQCEPDNVTCLLLLQACARLNALEFGERIHSYITERGYGGVLNLSNSLISMYSRCGCLDKAYEVFMGMENKTVISWSAMISGLAVNGYGREAIEAFEEMQRNGIRPDDHTFTGILSGCSHSRLLDEGMSFFDRMISEFRITPAIHHYGCMVDLFGRAGLLDKAYQLITSMEVKPDSTVWRTLLGACRIHGDVALGERVIGHLIELKAQEAGDYVLLLNIYSSAGQWEKVAEVRKLMREKSIQTTPGCSTIELKGVVHEFVVDDISHSKMVELYHTLDEINKQLKIAGYVVELSSELHKIDDKEKCYALSYHSEKLAIAFGVLATPPGTTLRVASNLRVCVDCHNFLKLFSAVYNRDVTLRDHKRFHHFRGGQCSCSDYW 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00941 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Car07g00941 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 391 IPR002885 -
Car07g00941 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Car07g00941 633 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 53 625 - -
Car07g00941 633 Pfam PPR repeat 125 154 IPR002885 -
Car07g00941 633 Pfam PPR repeat 400 425 IPR002885 -
Car07g00941 633 Pfam PPR repeat 300 325 IPR002885 -
Car07g00941 633 Pfam PPR repeat family 326 373 IPR002885 -
Car07g00941 633 Pfam PPR repeat family 222 273 IPR002885 -
Car07g00941 633 Gene3D Tetratricopeptide repeat domain 11 171 IPR011990 GO:0005515
Car07g00941 633 Gene3D Tetratricopeptide repeat domain 299 523 IPR011990 GO:0005515
Car07g00941 633 Pfam DYW family of nucleic acid deaminases 541 633 IPR032867 GO:0008270
Car07g00941 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Car07g00941 633 TIGRFAM PPR: pentatricopeptide repeat domain 225 254 IPR002885 -
Car07g00941 633 TIGRFAM PPR: pentatricopeptide repeat domain 126 156 IPR002885 -
Car07g00941 633 TIGRFAM PPR: pentatricopeptide repeat domain 363 391 IPR002885 -
Car07g00941 633 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Car07g00941 633 Pfam E motif 443 505 IPR046848 -
Car07g00941 633 Gene3D Tetratricopeptide repeat domain 177 289 IPR011990 GO:0005515
Car07g00941 633 PANTHER OS08G0434000 PROTEIN 53 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00941 Car-Chr7 8314057 8316330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00941 59 633 Glycoside Hydrolase AT3G49170 34.364 1.93e-116 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00941 - - lja:Lj0g3v0169319.1 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00941 07 8314057 8316330 Car07g00941 07 8314057 8316330 ECH