Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00886 ATGTCAGAAACCCAAAGAGCTTCTTCTTCATCAACCCTTGTCGACACTTTAGGCGAAGAAATCGTTAGAATAATAACCCCCGTTTCAATCTGCATGTTCCTCGTAGTCATCTTAGTCTCAATTCTCAACACCGACGATTCCCCAACAATCGCCACCATAGCCAACATAGCATACGAAGAAACAACCTCAGACTCTTCCTGGGACAAATTCCTCGGCGCACTTCTAAATTCCTTAGCCTTCGTCGTCGTAGTAACATTTGCCACTTTTTTCTTAGTCCTCCTCTTCTATTTCCGATGCACCAGATTCTTAAAACTCTACATGGCTTTCTCTTCCTTTGTCGTTTTAGGTTTCCTCGGCGGCGAAATTTCCGTTTTTTTGATTCAGCATTTTAACACGCCAATTGATTGCTTAACTTTTTTTATTGTTCTGTGTAATTTTGCTGTTGTTGGTGTTTTGGCTGTTTTTATGTCGAAAATGGCTATTTTTGTTACACAAGGGTATTTGGTAATTATTGGAATTTTGGTTGCTTATTGGTTTACTATGTTGCCTGAATGGACAACTTGGGCTATGCTTGTTGCTATGGCTTTGTATGATGTTGCTGCTGTTTTGTTGCCTGTTGGGCCTTTGAGGCTTTTGGTAGAACTTGCAATATCTAGGGATGAAGAAATTCCGGCATTGGTTTATGAGGCTAGGCCGGTGAATAATGATAATTTGGATCCCAGGGAAGTTGCGGCTCGGAGAAGGTTATGGAGAGAGAGgaggattgagaattcaaatttgatagctgagaatggaaattCTGTGTTAGGTAGTAGTGGTCTTATTGCTGAACAATCACACTCTAATTCGGACACAAACGCTGTTCTTAGTTTGAATTCAAACAGAAATACCCTAGAGGACAGGAATTTGGCTTCGGAAAATGTTTGGATTTTGAATACTAGTAGTTCTTGTGGTACATGTAATTTGGTACGAGCCGAAGAGGGGCGGGTTCGAGAAACCAATTCAGATCTCGCCACACCCTTGATCAGTCATGGAATGAATAGAGGAGAAGATGTGGCGTCGGATGAGAATCTGATACTAGAGGGAATTGGATTGGGTTCGTCAGGTGCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGCGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACAGTGTATGCATGTTATCTTGCAATTATTGCTGGTCTCGGCGTAACTTTGATGCTTTTGGCTTTATATCAGAAAGCCTTGCCTGCTCTTCCTGTGTCGATAGCACTGGGCTCAGTTCTCGGCGATAAAGCATATTACATTATCATAGCTAAAGCTCTGGGCTTCAGGTTTAAGCTTTTGTTGCAAGGCTCTCTAAAAATGTAA 1386 0.4062 MSETQRASSSSTLVDTLGEEIVRIITPVSICMFLVVILVSILNTDDSPTIATIANIAYEETTSDSSWDKFLGALLNSLAFVVVVTFATFFLVLLFYFRCTRFLKLYMAFSSFVVLGFLGGEISVFLIQHFNTPIDCLTFFIVLCNFAVVGVLAVFMSKMAIFVTQGYLVIIGILVAYWFTMLPEWTTWAMLVAMALYDVAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNNDNLDPREVAARRRLWRERRIENSNLIAENGNSVLGSSGLIAEQSHSNSDTNAVLSLNSNRNTLEDRNLASENVWILNTSSSCGTCNLVRAEEGRVRETNSDLATPLISHGMNRGEDVASDENLILEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLALYQKALPALPVSIALGSVLGDKAYYIIIAKALGFRFKLLLQGSLKM 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00886 461 SMART psh_8 71 439 IPR006639 GO:0004190|GO:0016021
Car07g00886 461 PANTHER PRESENILIN 11 433 - -
Car07g00886 461 Pfam Presenilin 18 433 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car07g00886 461 Gene3D Presenilin 364 443 IPR042524 -
Car07g00886 461 PRINTS Presenilin family signature 198 215 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car07g00886 461 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car07g00886 461 PRINTS Presenilin family signature 181 188 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car07g00886 461 PANTHER PRESENILIN 11 433 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00886 Car-Chr7 7870992 7872479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00886 1 433 Miscellaneous Gene Families AT2G29900 58.028 1.00e-143 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00886 K04505 - gmx:100780823 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00886 07 7870992 7872479 Car07g00886 07 7870992 7872479 ECH