Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00880 ATGGCAATGCAGGAAACAAGCCCTTCCACTGCTCCTAGTGCTCAAATGGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCATCAATCCCCGGACTTAGTGCACAGATTCTATCAGGATTCAAGTCTCTTAAGCAGATCAGACAGCAATGGTGTCATGAAGACTGTAACAACTACAAAAGCAATCAATGAAACAATTGTTTCCCTGAACTATGAAGATTGTACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAAGAAGTTCTCACAGACCTTCTTTTTGGCTCCACAAGATAAAGGTTATTATGTCTTAAATGACGTCTTTAGGTTCATCGAGGAGAATGATAGCCCACAGTTAAATTCTGCCTCAATAAATGTCATCAATGAAAATGCCGAGACAGTGCACATGCTAGAATCAGACCCTGCAACCTCTGCAGAGGATGAAAAGATTAATAATAGTACTGAAGTTTATCATCCTCGGGACAACAAGGAAGAAGGATCCGTTATTGATGAAGAGGTTGCCATAGAGTCTACTGATTTAAGTCAGAAGGATATTGTTACGATTCATGATTCAACATCAGCAGTCCAGGATGATGCACGAAAGACCTCATATGCATCAATTGTAATGAAAAGTAACACAGCATCTGGTCATGTCTATGTTCCCAGCCGAGCTGCAAGAGTGGCATCTGCTAAATCCAATGAACAATGGCATGCTACAGCAAAATCTACTCCTGGGCCTGAAGCATTAGCTCCTAGCGGTGAAAGTGTACCAGGGAGTAGTGATTTTCCTGAAGCTGAAGGTCATTCCATATACATACGAAACTTGCCATTTAATGCAACAATCGAACAACTCGAAGAGGTTTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGTAGTAAGCACGGTTTCTGTTTTGGCTTTGTTGAATTTGAGGAATCGAGTTCCATGCACAGTGCACTTAAGGCATCACCTATCACTGTTGGTGAGCGACAGGCTGTTATCGAGGAAAAGATATCTACTACACGAGTCAGCGATAGTGGGAGAGGGAGGTATCCTTCAGGGAGAGGTGGTTTCCGAGGCGAGAATTTCCGGGGGCGTGGGAGATTTGGTGGTGGACGTGGTTATGGAAGAAGTGAATTCAGAAATCAAGGGGAATTCTCAGGACGACCTAGGAGTTCTCAACGGCCACGTCAGAATGGAGGTGGGCGTGGTGAACGTCATGGTGTGGGGAACCATAATGTTACCCCTTCTACTTCAGTGTGA 1347 0.4336 MAMQETSPSTAPSAQMVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTKAINETIVSLNYEDCTAEIKTADAQESHEKGVIVLVTGCLTGKDNVRKKFSQTFFLAPQDKGYYVLNDVFRFIEENDSPQLNSASINVINENAETVHMLESDPATSAEDEKINNSTEVYHPRDNKEEGSVIDEEVAIESTDLSQKDIVTIHDSTSAVQDDARKTSYASIVMKSNTASGHVYVPSRAARVASAKSNEQWHATAKSTPGPEALAPSGESVPGSSDFPEAEGHSIYIRNLPFNATIEQLEEVFKKFGPIKHGGVQVRSSKHGFCFGFVEFEESSSMHSALKASPITVGERQAVIEEKISTTRVSDSGRGRYPSGRGGFRGENFRGRGRFGGGRGYGRSEFRNQGEFSGRPRSSQRPRQNGGGRGERHGVGNHNVTPSTSV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00880 448 SMART rrm1_1 292 363 IPR000504 GO:0003723
Car07g00880 448 SUPERFAMILY RNA-binding domain, RBD 285 397 IPR035979 GO:0003676
Car07g00880 448 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 438 IPR039539 -
Car07g00880 448 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Car07g00880 448 Gene3D - 274 374 IPR012677 -
Car07g00880 448 CDD RRM_SF 293 350 - -
Car07g00880 448 Gene3D - 6 137 - -
Car07g00880 448 MobiDBLite consensus disorder prediction 368 448 - -
Car07g00880 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 376 IPR000504 GO:0003723
Car07g00880 448 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Car07g00880 448 MobiDBLite consensus disorder prediction 413 427 - -
Car07g00880 448 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 438 - -
Car07g00880 448 MobiDBLite consensus disorder prediction 257 286 - -
Car07g00880 448 CDD NTF2 13 135 IPR018222 -
Car07g00880 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 350 IPR000504 GO:0003723
Car07g00880 448 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00880 Car-Chr7 7829287 7834462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00880 K24983 - gmx:100801253 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00880 07 7829287 7834462 Car07g00880 07 7829287 7834462 ECH