Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00839 ATGTCAAAGCTTCAAGTTCATCAAGTAAATCAATTAAGAGAAATCTTCGCTCGATTCGACATGGATTCCGATGGAAGCCTAACAATGTTAGAGCTAGCAGCACTTCTTCGATCATTAGGCCTAAAACCTTCGGGTGACGAACTTCAATCCATGTTAACCAAAATGGACTCAAACGGAAACGGTTCTGTTGAGTTTGATGAATTGATGAGAGCCATAATGCATGAGATGAATGAAGAGATTTTATTGAATCAAGAACAACTCGTAGACGTGTTCAAGTGCTTCGATCGTGATGGGAATGGTTACATAACAGCTGCAGAATTGGCTGGAGCAATGGCTAAAATGGGTCAGCCACTTACTTATAGAGAGCTCACTGAGATGATTCAAGAGGCTGATTTGGATGGTGATGGTGTTATTAGTTTTAGTGAGTTTGCTACTATTATGGCTCGCTCTGCTTCTCAATTTTTAGGAGTATAG 474 0.403 MSKLQVHQVNQLREIFARFDMDSDGSLTMLELAALLRSLGLKPSGDELQSMLTKMDSNGNGSVEFDELMRAIMHEMNEEILLNQEQLVDVFKCFDRDGNGYITAAELAGAMAKMGQPLTYRELTEMIQEADLDGDGVISFSEFATIMARSASQFLGV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00839 157 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Car07g00839 157 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Car07g00839 157 PANTHER CALCIUM BINDING PROTEIN 3 157 - -
Car07g00839 157 SUPERFAMILY EF-hand 6 148 IPR011992 -
Car07g00839 157 SMART efh_1 47 75 IPR002048 GO:0005509
Car07g00839 157 SMART efh_1 122 150 IPR002048 GO:0005509
Car07g00839 157 SMART efh_1 11 39 IPR002048 GO:0005509
Car07g00839 157 SMART efh_1 86 114 IPR002048 GO:0005509
Car07g00839 157 CDD EFh 11 73 IPR002048 GO:0005509
Car07g00839 157 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Car07g00839 157 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Car07g00839 157 Gene3D - 80 155 - -
Car07g00839 157 CDD EFh 86 148 IPR002048 GO:0005509
Car07g00839 157 Gene3D - 1 79 - -
Car07g00839 157 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Car07g00839 157 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Car07g00839 157 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Car07g00839 157 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Car07g00839 157 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Car07g00839 157 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Car07g00839 157 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00839 Car-Chr7 7471998 7472824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00839 8 157 EF-hand Containing Proteins AT1G18530 71.333 2.10e-79 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00839 K13448 - gmx:100795885 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00839 07 7471998 7472824 Car07g00839 07 7471998 7472824 ECH