Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00524 ATGACCATCGACTTAGATTCAATCACTCGCAAAGTCGATGTCGACAATCGCATTCCTCTCCGCTATTACTATCGAATTGCCGATAATCTCCTCAAGCAGGCTAGTGTCTACAGGGAGGAGAATAATATAGTTGACTTGTACATCATACTCCTTAGATTTATAAGTTTGGTTTCAGAGACCATACCGTATCATCGAGATTACCAAACTTCACTTCCTAATGAAAGAGCAGCATATAAGAGGAGATCGCGACTTGTATTGGATGAGCTTGAGTCCGTGAAGCCTGAATTCAAACGCCGGTTGGACAAATTGAATGAATCACATTTACAAGCTCCATTGCCTGAAGAAAATGGCTTCAATATGGCTTTGCAGAGTCCAGCGAGTTCATCTTTGGAATGGCCAGCTGTCAATAAAAGATATAACTCAAGCATGGATTTCAAACAGTCTGCTGGATTGGGTTCACAATCTTCATGGACATATAATAATACCACGTTATCTTCAACTTCCATCCCCACCGACAAGCAGTTTCAGAAATTATCTCTTAATCTACCCCTACCAAAGAAGGAGACCTTGTCAAGACACTCATTTTTAGGACCAAATGGTCTCCGGGGACAATGGCTCGGTCCTACTACTGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGCCAAGGATTCAAGTGCTGTAAAGTATGATCTTGTTGGCATTAAAGATGATGATCAAGGACCAGTTACATCCACAATGGATTCAATTCTCTCCTTGGATGATGGAAGATGGTTGCATCCTCCTGTTGAGTCCTGTTCTCCTGTTGTATCGGAATCCTTACAGTTGCTCAACATCAAGCAACCTTTGCCTCCTCCTGTTCTTGCTCAGGTTTACCCAGAATCTGCCTCCATTCCTCCTTCAAAAGTTGCAGATCCAAGACCAGGACCAGCAAAATCTTCTCATGACTCTGGACTTGGTCCCACTACATATCAACACCTACACATTCCTGTCAAAATGATGGATGACTTTCTCAGATTGGCTTCACAAAACACGCGAAAGAACTTAGAGACTTGTGGTGTTCTTGCAGGGTCTCTGAAAAACAGGGTTTTTCAGATCACAACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTCAAACGTTGAATGAAGAAGAAATATTTGAAGTTCAAGATGGCTTGTCACTTTTTCCTTTAGGTTGGATACATACACACCCGTCACAGACTTGTTTCATGTCATCCGTGGATCTGCACACACATTACTCATATCAGATAATGTTACCAGAAGCAATTGCTATAGTCATGGCTCCTACAGATACAACAAGTCCACATGGCATATTTCATCTGTCTGATCCAGGTGGTGTATCTGTTATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTTCAGATGGAAGTCCCATATATGAGCACTGCTCTCATGTCTATATGAATGCTAACATGAAGTTTGATGTTATTGACCTTCGAGAGAGATGA 1521 0.4188 MTIDLDSITRKVDVDNRIPLRYYYRIADNLLKQASVYREENNIVDLYIILLRFISLVSETIPYHRDYQTSLPNERAAYKRRSRLVLDELESVKPEFKRRLDKLNESHLQAPLPEENGFNMALQSPASSSLEWPAVNKRYNSSMDFKQSAGLGSQSSWTYNNTTLSSTSIPTDKQFQKLSLNLPLPKKETLSRHSFLGPNGLRGQWLGPTTEIKVQYPSSSDLTHAKDSSAVKYDLVGIKDDDQGPVTSTMDSILSLDDGRWLHPPVESCSPVVSESLQLLNIKQPLPPPVLAQVYPESASIPPSKVADPRPGPAKSSHDSGLGPTTYQHLHIPVKMMDDFLRLASQNTRKNLETCGVLAGSLKNRVFQITTLIIPKQESTSDSCQTLNEEEIFEVQDGLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANMKFDVIDLRER 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00524 506 Gene3D - 2 123 - -
Car07g00524 506 CDD MPN_AMSH_like 327 504 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Car07g00524 506 Gene3D Cytidine Deaminase, domain 2 314 506 - -
Car07g00524 506 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 326 433 IPR000555 GO:0005515|GO:0008233|GO:0008237
Car07g00524 506 MobiDBLite consensus disorder prediction 301 323 - -
Car07g00524 506 ProSiteProfiles MPN domain profile. 330 460 IPR037518 -
Car07g00524 506 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 504 - -
Car07g00524 506 Coils Coil 86 106 - -
Car07g00524 506 PANTHER AMSH-LIKE PROTEASE 3 504 - -
Car07g00524 506 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Car07g00524 506 SMART pad1_6 329 457 IPR000555 GO:0005515|GO:0008233|GO:0008237
Car07g00524 506 SUPERFAMILY JAB1/MPN domain 329 460 - -
Car07g00524 506 SUPERFAMILY USP8 N-terminal domain-like 4 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00524 Car-Chr7 4632172 4641545 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00524 K11866 - gmx:100812784 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00524 07 4632172 4641545 Car07g00524 07 4632172 4641545 ECH