Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03822 ATGTCACACAAACTCTCACTACATTTCTATCACACTTCTCTTCTAAAAAACCCCAACCTCATATCACACTCAACCCGCCACTCACCTTCCCTTCTCAAGAACACCACTATCCCCCATTCAACTAACCAATCCATTGCTACAGTGTCGAAACACCGTCGCTTCGAGTTCCTAACACCTCGCGTAGTTCAAAATCACGATGTCACTGATGAATCCGAAGATAGAAACCAAATCAGCGACTGCTACGAAGAGAACAAAGATGAAGGAGAAGTGAAGGAACTGCTTGAACAGAGTATATGGAATCAGATGAAGGAAATTGTTTTGTTTACTGGGCCTGCTATTGGGCTTTGGTTATGTGGCCCGTTGATGAGTCTCATTGATACTGCAGTTGTTGGTCAGGGAAGTTCAATTGAGCTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGTGATTACTTGAGCTACACGTTCATGTTTCTGTCTATTGCTACTTCAAATATGGTTGCTACTGCCCTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTAGCATGTGGCTTTGTGATGCTTTTGTTCACAAGGTTATTTGGTGCAACAACACTCGCGGCTTTTACTGGACCCAAGAATGTACATATAGTACCTGCAGCTAATACCTATGTCCAGATTCGAGGCTTGGCTTGGCCTTCTTTACTTGTTGGATCGGTTGCTCAAAGTGCAAGtcttggtatgaaagattcttggggacccttgaaggcattagctgctgccagtattataaatggaattggtgatataattctgtgcacctacttaggctatgggattgccggggctgcatgggctacattggcatcacaaGTTGTTGCTGCATATATGATGAGCCAAACTCTAAACGAGAAGGGATACAATGCATTTGCCTTCTCCATTCCTTCAGGGAAGGAATTTGTGGCAATATTTAGTCTTGCTGCTCCTGTATTTATTTCATTGATGTTAAAGGTGGCTTTCTACTCTCTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgtcatgattcagatttacatgacatgtacaatatgtggtgaacctctatcccagactgctcaatcatttatgcctgagttAATGTATGGAATAAATAGGAGTTTGGCAAAGGCTCGGTCGCTTTTAAGGTCTCTTGTAATTATTGGAGCTATACTTGGGTTGCTTTTTGGTATTGTTGGAACATCTATTCCTTGGTTATTCCCCTACATGTTTACACCTGATCAGATGGTCATCCAGGAGATGCATAGGTTGCTGATTCCGTACTTTTTAGCGCTAGTGGTGACACCTGCAACTGTCAGTCTCGAGGGAACATTGCTGGCTGGGCAGGATCTAAAATTTTTAAGCTTGTCAATGAGTGGATGCTTCTGTTTGAACGCTTTAGTATTATTGATCTTATGTAGTAGATATGGTTTGCAAGGATGTTGGTTTTCCCTTGCTGGATTTCAATGGGCTCGGTTTTTAATGGCCCTTCTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATACAAGCCAGTATAAGTTGCAAACGTTGAAGACAGCATAG 1638 0.3651 MSHKLSLHFYHTSLLKNPNLISHSTRHSPSLLKNTTIPHSTNQSIATVSKHRRFEFLTPRVVQNHDVTDESEDRNQISDCYEENKDEGEVKELLEQSIWNQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLSYTFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLACGFVMLLFTRLFGATTLAAFTGPKNVHIVPAANTYVQIRGLAWPSLLVGSVAQSASLGMKDSWGPLKALAAASIINGIGDIILCTYLGYGIAGAAWATLASQVVAAYMMSQTLNEKGYNAFAFSIPSGKEFVAIFSLAAPVFISLMLKVAFYSLLIYFATSMGTHTMAAHQVMIQIYMTCTICGEPLSQTAQSFMPELMYGINRSLAKARSLLRSLVIIGAILGLLFGIVGTSIPWLFPYMFTPDQMVIQEMHRLLIPYFLALVVTPATVSLEGTLLAGQDLKFLSLSMSGCFCLNALVLLILCSRYGLQGCWFSLAGFQWARFLMALLRLLSPNGILYSEDTSQYKLQTLKTA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03822 545 CDD MATE_DinF_like 101 524 IPR044644 -
Car06g03822 545 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 37 534 - -
Car06g03822 545 Pfam MatE 117 269 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car06g03822 545 Pfam MatE 331 490 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car06g03822 545 TIGRFAM matE: MATE efflux family protein 111 504 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car06g03822 545 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 37 534 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03822 Car-Chr6 69889313 69895252 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03822 K03327 - mtr:MTR_4g071390 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03822 06 69889313 69895252 Car06g03822 06 69889313 69895252 ECH