Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03820 ATGGCACTCAAAATCCCACCAATAATTCATCCTCGCTCTCTTCACATTCTTCCCCGCCAAAACCCTAATCTCACACCACTCTCTCCCTCTCCAACCGTTTCTAACCGTCATCTTCCTCTTCATTTCTTCCCACCTTCCCTTTCTCCAAATTTAATCCTCTCACCCTCCGCACTTCACCGACCTCGCTTCGTAACCGCTCGCGCCGCAATTCAAGGCCATGAAGAATTCACCGGTGATGCTGATGGCCTCGCAGATTCAACCGAACACAAAGACCGAATCACCGAAGCTTCTGAAGAAGATAAAACGACGCAGAGTAGTGAGAAGGAACTAGCGAAACAGGGCATATGGATTCAGATGAAGGAAATTGTCGAGTTTACAGGACCAGCAACGGGACTTTGGATCTGTGGACCGTTAATGAGTCTAATTGACACTGCAGTTATTGGTCAGGGAAGTTCAATTGAGCTTGCTGCTTTAGgtcctgcaacagttgtttgtgattacatgagctatgtgttcatgtttctatcagttgctacttccaatatggttgctactgcccttgctaaacagGATAGAGAAGAAGTGCAGCATCACATATCTGTCTTGCTTTTTGTTGGGTTGGTTTGTGGCTTCACAATGCTTTTGTTCACAAGGCTATTTGGTGCTGCCTCACTCACTGCTTTCACTGGGTCAAAGAATGCACATGTAGTACCTGCAGCTAACACTTATGTACAGATTCGAGGCTTCGCATGGCCTGCTTTACTTGTTGGATGGGTCGCACAGAGTGCAAGtcttggtatgaaagattcatggggacccttgaaagctttggctgctgctagtgctataaatggcattggtgatatacttttgtgcacctatttaggctatggaattgcaggggccgcatgggctacaatggcatcacaaGTTGTTGCTGCTTATATGATGATGCGAAGTCTAAACATGAAGGGATACAATGCCTTTTCATTATCTATCCCTTCGGGGAGGGAACTTCTGACGATACTTGGGCTTGCTGCTCCTGTGTTTATGACAATGATGTCCAAGGTGGCTTTCTACTCCCTGCTAATATATTTTGCAACATCAATGGGTACACATACAATGGCTGCTCATCAAGTCATGGTCCAAACCTTTTGCATGTGCACAGTATGGGGTGAACCTCTCTCCCAAACTGCGCAATCATTTGTGCCTGAATTGTTATATGGAGTTAATCGGAATTTGTCAAAGGCCCGGTTGCTTCTAAGATCTCTTGCACTAATTGGAGCTATTCTTGGATTGTTATTAGGAACAGTTGGAACATCAGTTCCTTTCTTATTTCCCTACATTTTTACACATGATCAGATGGTCATTCAGGAGATGCATAAGGTGCTGATTCCATACTTTGTAGCACTGGCTGTGACACCCCCTACTCACAGCCTTGAGGGAACGTTGCTGGCCGGAAGGGATCTAAGATACATAAGTTTGTCAATGAGTGGATGCTTATGTGGGGGTGCACTGGTATTAATGATCTTGAGTAGCAGATACGGTTTGCAAGGCTGTTGGTTCTCCCTTGCATTATTTCAATGGGCTCGTTTTTCGATGGCCCTCATTCGACTTCTTTCTCCCAAGGGCATTTTATACTCGGAAGATACTGACCAGTATAGACTGCAAAAGATTAGGAATGCTTAG 1689 0.3896 MALKIPPIIHPRSLHILPRQNPNLTPLSPSPTVSNRHLPLHFFPPSLSPNLILSPSALHRPRFVTARAAIQGHEEFTGDADGLADSTEHKDRITEASEEDKTTQSSEKELAKQGIWIQMKEIVEFTGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPATVVCDYMSYVFMFLSVATSNMVATALAKQDREEVQHHISVLLFVGLVCGFTMLLFTRLFGAASLTAFTGSKNAHVVPAANTYVQIRGFAWPALLVGWVAQSASLGMKDSWGPLKALAAASAINGIGDILLCTYLGYGIAGAAWATMASQVVAAYMMMRSLNMKGYNAFSLSIPSGRELLTILGLAAPVFMTMMSKVAFYSLLIYFATSMGTHTMAAHQVMVQTFCMCTVWGEPLSQTAQSFVPELLYGVNRNLSKARLLLRSLALIGAILGLLLGTVGTSVPFLFPYIFTHDQMVIQEMHKVLIPYFVALAVTPPTHSLEGTLLAGRDLRYISLSMSGCLCGGALVLMILSSRYGLQGCWFSLALFQWARFSMALIRLLSPKGILYSEDTDQYRLQKIRNA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03820 562 TIGRFAM matE: MATE efflux family protein 130 521 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car06g03820 562 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 54 551 IPR044644 -
Car06g03820 562 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 54 551 - -
Car06g03820 562 MobiDBLite consensus disorder prediction 78 107 - -
Car06g03820 562 Pfam MatE 136 284 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car06g03820 562 MobiDBLite consensus disorder prediction 75 108 - -
Car06g03820 562 CDD MATE_DinF_like 118 541 IPR044644 -
Car06g03820 562 Coils Coil 556 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03820 Car-Chr6 69874435 69880505 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03820 K03327 - gmx:100778295 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03820 06 69874435 69880505 Car06g03820 06 69874435 69880505 ECH