Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03809 ATGGATCATCGGACTTTATTTCTCTTCCTTATTTTCATCCTCTTCTCCGTCACGGTGTTCTCATCGGAGACCGTCGAAGAAGATCCGTTAATCCGTCAGGTGGTCGACGACGGAGGAGTTAGGTTGGGAGCAGAGCATCACTTTATTGAATTCAAGCATAGGTTCGGGAAGGTCTATTCTACCAAGGATGAGCACGATTACAGATTCAATGTCTTTAAGGCTAACATGCGCCGTGCTAAGAGGCACCAGTTAATGGACCCTTCGGCTGTTCATGGTGTTACTCGGTTCTCTGATCTGACTCCGCGTGAGTTTCGGAATAGCGTTTTGGGATTGCGTGGGTTGAGAGACCGTGGAGCGGTTACCTCTGTTAAGAATCAGGGTTCTTGTGGGTCGTGTTGGAGCTTCAGCACAACTGGGGCACTTGAAGGTGCTCACTTCCTCTCTACCGGAGAACTCGTGAGCCTTAGCGAGCAGCAGCTAGTCGATTGTGATCATGAGTGTGATCCAGATGAGCCGGGTTCTTGCGACTCCGGATGCAACGGTGGATTGATGAATAGTGCTTTTGAGTACATTTTAAAATCTGGTGGGGTCATGCGAGAGGAAGACTATCCTTATTCTGGTACTGACCGCGGAACATGCAAGTTTGACAAGGAAAAGATTGCTGCATCAGTGGCAAATTTCAGTGTTGTTTCACTCGATGAAAACCAGATTGCTGCCAATCTTGTCAAAAATGGCCCTCTTGCAGTGGCCATAAATGCAGTATATATGCAGACATATGTGGGTGGAGTATCATGCCCATACATATGTTCAAGGCGTCTGGACCATGGAGTGTTACTGGTAGGATATGGTTCTGGAGCCTATGCACCTATTCGAATGAAGGAGAAGCCATATTGGATTATTAAAAATTCATGGGGAGAGAATTGGGGAGAAAATGGATTCTACAAGATTTGCAGGGGACGAAATATCTGTGGAGTGGACTCTATGGTTTCTACTGTGGCTGCTGTTCATACCACTACTCAGTAG 1023 0.4682 MDHRTLFLFLIFILFSVTVFSSETVEEDPLIRQVVDDGGVRLGAEHHFIEFKHRFGKVYSTKDEHDYRFNVFKANMRRAKRHQLMDPSAVHGVTRFSDLTPREFRNSVLGLRGLRDRGAVTSVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQQLVDCDHECDPDEPGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGTCKFDKEKIAASVANFSVVSLDENQIAANLVKNGPLAVAINAVYMQTYVGGVSCPYICSRRLDHGVLLVGYGSGAYAPIRMKEKPYWIIKNSWGENWGENGFYKICRGRNICGVDSMVSTVAAVHTTTQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03809 340 SUPERFAMILY Cysteine proteinases 46 332 IPR038765 -
Car06g03809 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 273 283 IPR025660 -
Car06g03809 340 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Car06g03809 340 PANTHER CYSTEINE PROTEASE RD19C-RELATED 115 334 - -
Car06g03809 340 SMART Inhibitor_I29_2 48 104 IPR013201 -
Car06g03809 340 CDD Peptidase_C1A 114 332 IPR039417 -
Car06g03809 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 297 316 IPR025661 -
Car06g03809 340 PANTHER CYSTEINE PROTEASE RD19C-RELATED 36 114 - -
Car06g03809 340 SMART pept_c1 114 333 IPR000668 GO:0006508|GO:0008234
Car06g03809 340 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 114 - -
Car06g03809 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 126 137 IPR000169 -
Car06g03809 340 Gene3D Cysteine proteinases 27 333 - -
Car06g03809 340 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 115 334 - -
Car06g03809 340 Pfam Papain family cysteine protease 115 331 IPR000668 GO:0006508|GO:0008234
Car06g03809 340 PRINTS Papain cysteine protease (C1) family signature 126 141 IPR000668 GO:0006508|GO:0008234
Car06g03809 340 PRINTS Papain cysteine protease (C1) family signature 297 303 IPR000668 GO:0006508|GO:0008234
Car06g03809 340 PRINTS Papain cysteine protease (C1) family signature 275 285 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03809 Car-Chr6 69755053 69757480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03809 K01373 - gmx:100812198 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03809 06 69755053 69757480 Car06g03809 06 69755053 69757480 ECH