Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03799 ATGTGCGACACTACGTTTGGAACTATTACTATTGATCAACCTCATAAAGGTATTGAGATTGAATATTTGGAGGAGGAAAAGAAGACAGGGCTTGAATCCTTAAAGAAGGTAGCAAGAAGTGCATCATCTAAGTTCAAACATTCAATGAAGAAAGGGCGAAGGCACAGCAGGGTTATGTCTGTTGTCGATGACTACGAAATCGATACAGAAGAGTTGCAGGTAGTCGACTCTTTTCGCCAAGCGCTTATTTTGGAAGAGTTGTTACCATCAAAACATGATGATCATCACATGATGCTAAGATTCTTGAGAGCAAGGAAGTATGACATTGAGAAAACAAAGCAAATGTGGGCAGATATGATCCAATGGAGAAGGGAATTTGGTGTTGAAACAATCATGGAGGATTTTGAATTCAAGGAGATAGATGAAGTTCTAAAATACTACCCTCAAGGAACACATGGAGTTGATAAAGATGGAAGACCTGTTTACATAGAAAGGTTGGGTATGGTTGACTCTAATAAGCTGATGCAAGTAACAACTATGGACCGGTATCTAAAGTACCATGTAAGAGAGTTTGAGAAGACATTCAATGTTAAGATGCCTGCTTGTTCAATTGCAGCAAATAAACACATTGACCAAAGCACAACTATCTTGGATGTGCAAGGACTGGGTCTAAGAAGTATGAATAAAGCTGCAAGAGATCTCCTACAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCTTAAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGATGTTGTGGAACACTGTTAAGTCCTTCCTTGATCCCAAGACTACCTCCAAAATCCATGTTCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGtgaacttccagagttcttggggggtacttgtacttgtgcagacaaaggtggttgcatgctttctgacaagggaccatggaatgacccaaaaatcttgaagATGGTTCAAAATGGTGAAGCAAAATACAGAAGCAAACCTTTCTTCAGGATCGAGGAGAAAACAATCATCGAAGACGTAACAGCGTGTCAAAAGAATTGTGATTCTTTTAACAATGAATATGCTCTTGAGGAGGCATGCCATGCTATAGCAAAAGTAGCAAAACAATGTAATGTATATCAGTTTGACACCGTGGTCCCAATGAATGAAAAAACTTGGAAGGAAGCTATACAAAGCGATAAAAAAGCACTTTCAGAAGGTTGCTTAGGTGACGATGTTTGCGAGACTTCTAATGGAATTGGAAATCAATTTATCGGTGGAATCATGTCCATTGTTTTGGGAATCATAACGTTCATCCGAATGTCGCGTAACATGCCAAATAAAATGACTGAAGTTGGTGATAACTCAGTGTATTATAATGGCGATATGATGAAAGTACCTGTCATTTCCATTGATGATCATATGGTTATGATGAAGCGCATAGCTGATCTAGAAGAGAAGGTGAATACTCTCAGTATTAGACCTTCCATGCCACTTGAAAAAGAGGAATTGCTCAACAGTGCTTTAAATCGTGTTGCTACACTAGAGCAAGAGTTGGCTATGACCAAGAAGGCACTTGATGGTGCACTTGTTAGGCAAGCAGAGCTTCAATCTTACATTGACAAAAAGAAAAATAAGAAGAAATTGTTCTGTCGGTAA 1692 0.3664 MCDTTFGTITIDQPHKGIEIEYLEEEKKTGLESLKKVARSASSKFKHSMKKGRRHSRVMSVVDDYEIDTEELQVVDSFRQALILEELLPSKHDDHHMMLRFLRARKYDIEKTKQMWADMIQWRREFGVETIMEDFEFKEIDEVLKYYPQGTHGVDKDGRPVYIERLGMVDSNKLMQVTTMDRYLKYHVREFEKTFNVKMPACSIAANKHIDQSTTILDVQGLGLRSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRMLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPKILKMVQNGEAKYRSKPFFRIEEKTIIEDVTACQKNCDSFNNEYALEEACHAIAKVAKQCNVYQFDTVVPMNEKTWKEAIQSDKKALSEGCLGDDVCETSNGIGNQFIGGIMSIVLGIITFIRMSRNMPNKMTEVGDNSVYYNGDMMKVPVISIDDHMVMMKRIADLEEKVNTLSIRPSMPLEKEELLNSALNRVATLEQELAMTKKALDGALVRQAELQSYIDKKKNKKKLFCR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03799 563 Coils Coil 516 536 - -
Car06g03799 563 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Car06g03799 563 Pfam CRAL/TRIO, N-terminal domain 85 118 IPR011074 -
Car06g03799 563 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Car06g03799 563 Gene3D - 61 126 - -
Car06g03799 563 Gene3D - 127 339 IPR036865 -
Car06g03799 563 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Car06g03799 563 SUPERFAMILY CRAL/TRIO domain 139 335 IPR036865 -
Car06g03799 563 SUPERFAMILY CRAL/TRIO N-terminal domain 66 135 IPR036273 -
Car06g03799 563 SMART sec14_4 139 310 IPR001251 -
Car06g03799 563 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 8 561 - -
Car06g03799 563 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 8 561 - -
Car06g03799 563 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Car06g03799 563 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Car06g03799 563 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Car06g03799 563 CDD SEC14 140 308 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03799 Car-Chr6 69689755 69694140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03799 100 304 Acyl Lipid Metabolism Gene Families AT5G47730 28.019 1.37e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03799 - - lja:Lj3g3v3363570.1 776.163