Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03797 ATGGCTAGTGATTCATTTGTAACCGTCAATGGAAATGGAAATGGCAATGAGATCTCACAGCCGAATCCGCGGAGGACTTACCAAGCAGTAGTCATTGCAACCCGAGATATGGGAATTTCTAAGGATGGAGAATTACCCTGGACATTGCCTACTGATCAAAAGTTTTTTGAGGACATCACAACGATAACATCAGATCCCGGGAAGAAGAATGCTGTTGTCATGGGTAGAAAATCATTTGAGGCTATCCCTCCTGAGAAAAGACCTCTCAGTGGTCGTCTTAATGTTGTTCTTACTCGCTCCGGTTGTTTCGATATTGCAAGTGCAGATAATGTTCTTTTATGTGGAAGTGTGTCTTCTGCTATGGAACTCTTGGCTGCTTCTCCTTATAACCTGTCAATTGAGAAAGTATTTCTTACTGGAGGTGGTGAGATATTTAGAGATGCTCTTCATGGACCTGGATGTGAAGCCATCCATATTACAGAAATTGAAGCAAGCATTGAATGTGACACTTTTATGCCTCGAATCGATTTCTCTGTATTTCATCCGTGGTACTCGTCTTTCCCTTTGGTGGAAAATGGCCTCCGCTACTCTTTTACCACTTATGTACGTGTAAGGTGTTCAGCAGAAGAATCCAAAGATCTCAATACTGATACAATTCTGTATGATAATTTAGACTCTCTAAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCTAAGATTATTTTTGAGAGACATGAGGAGTACAAGTATCTTAGATTAGTTGAAGAAATCATTTCTGAAGGTACAGCTAAGGATGATAGGACGGGAACTGGTACCTTGTCAAAATTTGGTTCCCAGGTAATATTTTTATTTGTTTGTAGTGGAGTTGCTATGATTTATACACTGACTTCCTTCTCTGTAATTCCACAGATGCGTTTTAATCTCCGTAGAAACTTTCCACTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGTGCTACAGGAAAAAGGCATTCATATATGGGATGGGAATGCGTCTAGAGAATACCTTGATAGCATTGGTTTGAAAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCAAGGTATACTAACATGCATGATGACTACTCTGGCCAAGGATTCGATCAGCTTTTAGATGTTATTAATAAGATAAAGCATAATCCTGATGATCGACGCATCATCCTCTCAGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCGCCCTGCCACATGTTTGCGCAGTTCTATGTGGCAAATGGGGAGTTATCATGTCAAATGTATCAACGATCTGCCGACATGGGCCTGGGCGTGCCATTTAATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATTCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGGCCTTTGCAGGAACAGCTCCAAAACCTGCCAAAACCTTTTCCGATTTTGAAGATAAATCCAGAGAAGAAAGATATAGATTCTTTTGTGGCTACTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1665 0.4066 MASDSFVTVNGNGNGNEISQPNPRRTYQAVVIATRDMGISKDGELPWTLPTDQKFFEDITTITSDPGKKNAVVMGRKSFEAIPPEKRPLSGRLNVVLTRSGCFDIASADNVLLCGSVSSAMELLAASPYNLSIEKVFLTGGGEIFRDALHGPGCEAIHITEIEASIECDTFMPRIDFSVFHPWYSSFPLVENGLRYSFTTYVRVRCSAEESKDLNTDTILYDNLDSLKFEVKKFSFLPKIIFERHEEYKYLRLVEEIISEGTAKDDRTGTGTLSKFGSQVIFLFVCSGVAMIYTLTSFSVIPQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLKEREEGDLGPVYGFQWRHFGARYTNMHDDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNLPKPFPILKINPEKKDIDSFVATDFKLIGYDPHQKIEMKMAV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03797 554 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 238 554 IPR036926 -
Car06g03797 554 Gene3D Dihydrofolate Reductase, subunit A 13 204 IPR024072 -
Car06g03797 554 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 283 - -
Car06g03797 554 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 294 554 - -
Car06g03797 554 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 303 554 IPR036926 -
Car06g03797 554 PRINTS Thymidylate synthase family signature 312 333 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 PRINTS Thymidylate synthase family signature 405 424 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 PRINTS Thymidylate synthase family signature 431 446 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 PRINTS Thymidylate synthase family signature 449 475 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 PRINTS Thymidylate synthase family signature 487 504 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 Pfam Dihydrofolate reductase 28 203 IPR001796 GO:0004146|GO:0046654
Car06g03797 554 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Car06g03797 554 PANTHER THYMIDYLATE SYNTHASE 1 294 554 IPR045097 GO:0016741
Car06g03797 554 PANTHER THYMIDYLATE SYNTHASE 1 1 283 IPR045097 GO:0016741
Car06g03797 554 Hamap Thymidylate synthase [thyA]. 247 554 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 MobiDBLite consensus disorder prediction 1 23 - -
Car06g03797 554 SUPERFAMILY Dihydrofolate reductase-like 26 203 IPR024072 -
Car06g03797 554 Pfam Thymidylate synthase 298 554 IPR023451 -
Car06g03797 554 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 226 282 IPR036926 -
Car06g03797 554 PIRSF DHFR-TS 287 554 IPR012262 GO:0004146|GO:0004799|GO:0006730
Car06g03797 554 PIRSF DHFR-TS 9 287 IPR012262 GO:0004146|GO:0004799|GO:0006730
Car06g03797 554 TIGRFAM thym_sym: thymidylate synthase 302 554 IPR000398 GO:0004799|GO:0006231
Car06g03797 554 CDD TS_Pyrimidine_HMase 250 507 IPR023451 -
Car06g03797 554 CDD DHFR 29 202 IPR001796 GO:0004146|GO:0046654
Car06g03797 554 ProSitePatterns Thymidylate synthase active site. 416 444 IPR020940 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03797 Car-Chr6 69677555 69680739 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03797 K13998 - gmx:100788658 931.398