Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03759 ATGGTATCTCAATCGGTTTCAGTTCCTACAAGTGCTAGCTTCACTATCGCTTCACACAGAACAACACCGTCCCAATTCGCGTTTTCTCACAGAAATCCAATAGCTTCTACCTTGTCAATCCCCTATGGTCATTCATCCAAAATCGGGTTATCAAGTAAAACCCGTGGTTTTCGTTTAAAACTTGATGAAAAAAATACGCATGATGCCAATTCAAGTTATGGTGTAATTGAAGCCAAGAAGGGGAACCCGCCAATAACACCAGCAGTGATGACTCCTGGAGGAGCTATTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAACCAGTTAATTCACAAGTGGCTCAGAGAGTTATATCACAGCTTGTGACTCTGGCCACTATTGACCCAGATGCAGATATACTGATGTATATAAATTGCCCTGGTGGAAGCACTTATTCAGTGCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGCTTTGGAGTCGCTGCAAGCCAAGGAACACTTCTCCTTGCAGGTGGGGAGAAGGGAATGCGCTACTCAATGCCAAATGCTCGCATAATGCTGAATCAACCACAGTGTGGATTTGAGGGTCATGTTGAGGATGTGAGACGTCTAGTGAATGAAGCTGTTCAATCCCGCCATAAAATTGAGAAGATGTTTAGTGCTTTCACCGGACAGCCATTAGAGAAGGTGCAAGAGTACACAGAGAGGGACAGTTTTCTATCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATAGATGGTGTCCTGGAAACAGAGTATTGA 819 0.4298 MVSQSVSVPTSASFTIASHRTTPSQFAFSHRNPIASTLSIPYGHSSKIGLSSKTRGFRLKLDEKNTHDANSSYGVIEAKKGNPPITPAVMTPGGAIDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMLNQPQCGFEGHVEDVRRLVNEAVQSRHKIEKMFSAFTGQPLEKVQEYTERDSFLSVSEALEFGLIDGVLETEY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03759 272 CDD S14_ClpP_2 97 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 16 272 - -
Car06g03759 272 SUPERFAMILY ClpP/crotonase 96 270 IPR029045 -
Car06g03759 272 Pfam Clp protease 95 270 IPR023562 -
Car06g03759 272 PRINTS Clp protease catalytic subunit P signature 97 112 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 PRINTS Clp protease catalytic subunit P signature 137 157 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 PRINTS Clp protease catalytic subunit P signature 168 185 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 PRINTS Clp protease catalytic subunit P signature 189 208 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 PRINTS Clp protease catalytic subunit P signature 246 265 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 16 272 IPR023562 -
Car06g03759 272 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 85 271 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car06g03759 272 Gene3D - 76 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03759 Car-Chr6 69195816 69200250 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03759 K01358 - gmx:100799710 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03759 06 69195816 69200250 Car06g03759 06 69195816 69200250 ECH