Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03741 ATGAGGCCTCTAATACTGAGAGATGCAGTTGTATATCGTGACCATGTTCAAGCAATAAAATCTGGTTTTGCATCATGCATTTTCACTTCTAATAAACTCATTCGCCTTTATTCTAATCATGGTCTTTTACAAGATGCCCACAAACTGTTCGACGAAATGCCACATCCAAATGTATTCTCTTGGAATGCCCTAATTATGGCTTACATTAAAGCACACAACTTGACACGGGCTAGAGTCCTTTTTGACTCTGCCTCTCACATAGATGTGGTTTCTTATAATACCATGTTGTCGGCTTATGTTGGTGCTGACGGATACGAGACTGAGGCACTCGATTTGTTTGCTAGAATGCAATCTGCACGTGACACAATAGGGATTGATGATTTCACTCTCACAACCATGCTTAACCTTACTGCCAAGCTACGTGTAGTGTGTTATGGGAGACAGATACATTCGTATATGGTGAAAACTGCAAATGATTTAAGCAAATTTGCATCGAGCGCTCTCATCAACATGTACTCTAAATGTGGTTTCTTTCGCGAAGCATGCAATGTGCTTAGTGGTTTTGATGGTGTGGTGGACTTAGTTTCCAAGAATGCAATGGCTGCTGCTTGTTGTAGGGAAGGAAAAATGGACATGGCTTTGAATGTCTTTCAGAAAAATCATGAATTGAATGATACAGTGTCTTGGAATACGTTGATTGCTGGATATGCTCAGAATGGCTATATGGATAAAGCACTGGCCTTGTTTGTTGAGATGACTGAAAGAGGTGTTGGGTATGATGAACATACTTTAGCAAGTGTTTTAAGTGCCTGCTCTGGCCTAAAGTATTTGAAACTGGGCAAGTGTGTCCATGCGTGGGCGTTGAAAAATAATCGGAGTTCAAATCAATTCATTAGCAGCGGCATCGTAGACTTGTACTGTAAGTGTGGGAATATTAGGTATGCAGAGTCGGTGTATGCAGGAATTGGGATCAAAAGCCAATTTGCAGTTGCTTCATTGATTGTAGGCTATTCATCTCAAGGCAACATGACGAAAGCCCGAATGCTTTTTGATTCACTATCGGAAAGGAACTCTGTTGTCTGGACAACTCTATGTTCTGGCTATGCAAAATTGCCACAATGTGAGGAAGTCTTCAAACTTTTCAGAGAGTTTATAAATGCAGAAGCACTAATTCCTGATGCAATGATCATCATAATTGTGCTTGGTGCCTGTGCAACACAAGCCGCCCTTTGTTTGGGAAAGCAGATTCATACTTACATCTTGAGAATGGGACTTAATATGGATAAAAAATTGCTGAGTGCTATGGTTGACATGTACTCAAAATGTGGTAATATCATGTATGCTGAGAAAAGCTTCCAACTAATGGTTGATAAGGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGCTTTGAAAATAAAGCTTTTCAGCTTTTTCAGGACATGTTGAAGAAAAGTGTCAAGCCAGACGCAGTCACTTTTGTAGCACTTCTATCTGCTTGTCGGCATCGTGGACTAGTAGAACAAGGAGAGAATATTTTTATTTCTATGAAAGAAGATTACAACGTGTTGCCCGAGATATACCACTATGCATGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAGAAGGCAGTAGAATTCATGAGGAAGATTCCCATACAGATAGATGCTACAATTTGGGGAGCATTCCTTAATGCTTGCCAGATAAACAACAATACATCACTTGTCGATGAGGCAGAAGAGAAACTATTAAAAGTTGAGTCTGATAATGGGTCTCGGTATGTGCAATTGGCCAATGTCTATGCTGCTGACGGGAAATGGGTTGAGATGGGAAGAATAAGGAAGAAAATGAGAGTGAAGGAGGCAAAAAAGCTTGCTGGTTGCAGTTGGATATATGTGAAAAATGGTATTCATGCATTTACTTCTGGTGATTCATCTCATGCAAAAGCAGATTCAATATATTCAACTTTGTTGTGCTTGAATGGCACAGAACTGAAGCAACTTCATGAAATTCGGGGGGATGTTCTTGTAGATGTATTTTGA 2067 0.3986 MRPLILRDAVVYRDHVQAIKSGFASCIFTSNKLIRLYSNHGLLQDAHKLFDEMPHPNVFSWNALIMAYIKAHNLTRARVLFDSASHIDVVSYNTMLSAYVGADGYETEALDLFARMQSARDTIGIDDFTLTTMLNLTAKLRVVCYGRQIHSYMVKTANDLSKFASSALINMYSKCGFFREACNVLSGFDGVVDLVSKNAMAAACCREGKMDMALNVFQKNHELNDTVSWNTLIAGYAQNGYMDKALALFVEMTERGVGYDEHTLASVLSACSGLKYLKLGKCVHAWALKNNRSSNQFISSGIVDLYCKCGNIRYAESVYAGIGIKSQFAVASLIVGYSSQGNMTKARMLFDSLSERNSVVWTTLCSGYAKLPQCEEVFKLFREFINAEALIPDAMIIIIVLGACATQAALCLGKQIHTYILRMGLNMDKKLLSAMVDMYSKCGNIMYAEKSFQLMVDKDRDAILYNVMIAGYAHHGFENKAFQLFQDMLKKSVKPDAVTFVALLSACRHRGLVEQGENIFISMKEDYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPIQIDATIWGAFLNACQINNNTSLVDEAEEKLLKVESDNGSRYVQLANVYAADGKWVEMGRIRKKMRVKEAKKLAGCSWIYVKNGIHAFTSGDSSHAKADSIYSTLLCLNGTELKQLHEIRGDVLVDVF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03741 688 Pfam E motif 579 639 IPR046848 -
Car06g03741 688 Pfam PPR repeat family 461 507 IPR002885 -
Car06g03741 688 Pfam PPR repeat family 225 271 IPR002885 -
Car06g03741 688 Pfam PPR repeat 535 558 IPR002885 -
Car06g03741 688 Pfam PPR repeat 90 118 IPR002885 -
Car06g03741 688 Pfam PPR repeat 166 185 IPR002885 -
Car06g03741 688 Pfam PPR repeat 332 357 IPR002885 -
Car06g03741 688 Pfam PPR repeat 359 384 IPR002885 -
Car06g03741 688 Pfam PPR repeat 196 219 IPR002885 -
Car06g03741 688 Pfam PPR repeat 29 53 IPR002885 -
Car06g03741 688 Pfam PPR repeat 433 458 IPR002885 -
Car06g03741 688 Pfam PPR repeat 59 82 IPR002885 -
Car06g03741 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 397 668 - -
Car06g03741 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 33 405 - -
Car06g03741 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Car06g03741 688 Coils Coil 577 597 - -
Car06g03741 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 405 - -
Car06g03741 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 397 668 - -
Car06g03741 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Car06g03741 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 119 IPR002885 -
Car06g03741 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Car06g03741 688 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Car06g03741 688 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Car06g03741 688 Gene3D Tetratricopeptide repeat domain 413 511 IPR011990 GO:0005515
Car06g03741 688 Gene3D Tetratricopeptide repeat domain 512 637 IPR011990 GO:0005515
Car06g03741 688 Gene3D Tetratricopeptide repeat domain 20 142 IPR011990 GO:0005515
Car06g03741 688 Gene3D Tetratricopeptide repeat domain 287 411 IPR011990 GO:0005515
Car06g03741 688 Gene3D Tetratricopeptide repeat domain 143 278 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03741 Car-Chr6 69044005 69046390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03741 63 665 Glycoside Hydrolase AT3G49170 32.343 2.21e-96 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03741 - - gmx:100803987 1079.32