Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03727 ATGACAGACACAAAAGGTGGAACCATGTTAATAGAACGAaataataccaataataataacaacaacaaaataCACAGACCAAAATTAGGAGCTTTTCTGCACTCAGAACCGACGTTGTTTAACATCTCTAACAACGACGATGATCATCATGGCCGTATCAGCAACGCCTCCGCCGCAAGTCCTCGAACTTATTACGGCGACAGTAGCAGCACCCCAACAAGCAGCAGCAACAATGCTTCTCCTTTCATGTTATCTCCATGGAACCAAGCTTCATCTCCCCTCAGCAAATCACCATGGTTAATGCCATCATCAGAAGCGATGAACTTCTTCCACCAACGCGACAATAACGAAGATAACTACTTTCCGGAAAACGGCCTAATCGGGTCGCTCGTTCGCGAAGAAGGTCATATATACTCTTTAGCCGTTTCTGGTGACTTGTTATACACCGGTTCCGATAGCAAAAACATAAGGGTGTGGAAAGAACTTAAAGATTACACAGGTTTCAAATCAAACAGCGGTTTAGTCAAAACAATAGTAATTTCCGACGGAAGAATTTTCACAGGTCACCAAGACGGAAAAATCAGAATTTGGAAAATTTCTTCTACAAATTCCAAAATTCATAAACGCGTTGGAAGCTTACCAACGTTTAAAGAATATGTAACAAGTTCAATGAATCCGAAGAACTACGTTGAAGTTCGGCGACATAAAAACGCGGTGAAAGTGAAGCATTTCGACGCTGTTTCTAGTTTGAGTTTGGATAAAACAGAAGGGTTGTTGTATTCAGGTTCGTGGGACAAAACGGTGAAAGTTTGGCGCGTTTCAGATTCAAAGTGTATGGAATCGATTAACGCTCACGATGATGCGGTGAACGCGGTGATTGCTGCATTTCAAGGCTACGTCTTCACCGGTTCCGCTGACGGAACGGTGAAAATGTGGAAGAGGGAAACAGATGGAAAGGGGAAGAAAACGAAACATGTTTTGGATAGGATTTTATTGAAGCAAGAGAACGCCGTGACGGCGTTAGCGGTTAACCATTCATCGACGGTGGTTTATTGCGGTTCGTCTGACGGGTTAGTTAATTTCTGGGAACGTCAGGATAAGAATAGTTTAACCCACGGAGGCGTTTTAAAGGGACATAAACTGGCCGTGTTGTGTCTGGAGGCGGCCGGAAACCTCAATGTCTGCGTGTGGAGGCGTGAAGAGAGTGGGACCCACATATGTCTTTCCGTTTTGACGGGACACACGGGTCCCGTTAAGTGCATTGCCGTTGAAGAACAAAAGGAGGAGGAGGATGATAATCGTGATTGTGTGAAGGAAAATCAACGGTGGATAGTTTACACTGGAAGTTTGGATAAGTCTGTAAAGGTATGGCGCGTGTCTGAATACGCGCCAAAATTGAAAATGATGCAAGGTTGGGCAGCTTTGAATTCGCCTTATGAATATGAATCCTCCCCCGCCACCAGATTGAGTTATTCTGCCCCAGGAACAATCAGTGTCAACAATACCAATAGCAATACAAGACACTTGCAAAAATAA 1536 0.4342 MTDTKGGTMLIERNNTNNNNNNKIHRPKLGAFLHSEPTLFNISNNDDDHHGRISNASAASPRTYYGDSSSTPTSSSNNASPFMLSPWNQASSPLSKSPWLMPSSEAMNFFHQRDNNEDNYFPENGLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKELKDYTGFKSNSGLVKTIVISDGRIFTGHQDGKIRIWKISSTNSKIHKRVGSLPTFKEYVTSSMNPKNYVEVRRHKNAVKVKHFDAVSSLSLDKTEGLLYSGSWDKTVKVWRVSDSKCMESINAHDDAVNAVIAAFQGYVFTGSADGTVKMWKRETDGKGKKTKHVLDRILLKQENAVTALAVNHSSTVVYCGSSDGLVNFWERQDKNSLTHGGVLKGHKLAVLCLEAAGNLNVCVWRREESGTHICLSVLTGHTGPVKCIAVEEQKEEEDDNRDCVKENQRWIVYTGSLDKSVKVWRVSEYAPKLKMMQGWAALNSPYEYESSPATRLSYSAPGTISVNNTNSNTRHLQK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03727 511 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 473 IPR045182 -
Car06g03727 511 Pfam WD domain, G-beta repeat 175 198 IPR001680 GO:0005515
Car06g03727 511 Pfam WD domain, G-beta repeat 134 160 IPR001680 GO:0005515
Car06g03727 511 Pfam WD domain, G-beta repeat 277 313 IPR001680 GO:0005515
Car06g03727 511 Pfam WD domain, G-beta repeat 336 362 IPR001680 GO:0005515
Car06g03727 511 Pfam WD domain, G-beta repeat 407 457 IPR001680 GO:0005515
Car06g03727 511 Pfam WD domain, G-beta repeat 243 271 IPR001680 GO:0005515
Car06g03727 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Car06g03727 511 MobiDBLite consensus disorder prediction 56 80 - -
Car06g03727 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 277 - -
Car06g03727 511 Gene3D - 238 511 IPR015943 GO:0005515
Car06g03727 511 SMART WD40_4 161 198 IPR001680 GO:0005515
Car06g03727 511 SMART WD40_4 234 272 IPR001680 GO:0005515
Car06g03727 511 SMART WD40_4 324 363 IPR001680 GO:0005515
Car06g03727 511 SMART WD40_4 275 313 IPR001680 GO:0005515
Car06g03727 511 SMART WD40_4 123 160 IPR001680 GO:0005515
Car06g03727 511 SMART WD40_4 404 458 IPR001680 GO:0005515
Car06g03727 511 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 16 473 - -
Car06g03727 511 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Car06g03727 511 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Car06g03727 511 PRINTS G protein beta WD-40 repeat signature 300 314 IPR020472 -
Car06g03727 511 MobiDBLite consensus disorder prediction 1 24 - -
Car06g03727 511 Gene3D - 121 231 IPR015943 GO:0005515
Car06g03727 511 MobiDBLite consensus disorder prediction 43 80 - -
Car06g03727 511 SUPERFAMILY WD40 repeat-like 127 469 IPR036322 GO:0005515
Car06g03727 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 372 IPR001680 GO:0005515
Car06g03727 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 313 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03727 Car-Chr6 68934500 68936096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03727 179 316 Acyl Lipid Metabolism Gene Families AT3G18860 28.481 7.78e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03727 - - gmx:100790597 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03727 06 68934500 68936096 Car06g03727 06 68934500 68936096 ECH