Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03615 ATGTCTTCTTCCTTTATTACTTCCAATCGCTTAACCCCTACCCTATCACCCCCTCCCCATCCCCTTCGTCGCCGCAATAATCGTATCTCTCGTCCTTCTTCCTTCAAATGTCATCTCTCTTCTTCCGACGACCACACTGATTCCTCCAACTCATCATCCCTTTTCAAAACCCTCTCCACCACCCTCGCCGTCTCATCCGCCGCATCCGCTCTTTTTCTCACCGATTCTCTCCATTTCCTCATCCCCGATTTATCCGGTGGCAATGCCAACGGAGGTCTTGGTGGAAGTGGTGGTGGATCCTCCTCcggcggcggcggcggaggaggaggTAACTGGTTTAACGGCGACGAAGGATCCTTCTGGTCAAGAATTCTCTCTCCATCAAGAGCCATCGCTGACGAACCTAAATCACAAGATTGGGATTCACACGAACTTCCGGTGAACATCACTGTTCAACTTAACAAACTGAGCGGGTTTAAGAGATACAAAATCTCAGAAATCACATTCTTCGATCGGAAAACGAAGAGGAAAATCGGAACCGAAGATTCGTTTCTAGACATGGTGTCTCTTAAACCTGGTGGAGTTTACACTAAAGCTCAGCTTCAGAAGGAGCTAGAAAGCTTAGCTTCTTGTGGAATGTTCGAGAAGGTTGACATGGAAGGGAAAACCAATGCAGATGGGTCAATGTCGTTGACGATTTCGTTTGCCGAGAGTATGTGGGAGAAAGCAGAACGGTTCAGATGTATCAATGTGGGTTTAATGGGTCAATCTAAACCGGTTGAGATGGACCCTGATATGACTGAAAGGGAGAAGCTTGAATTTTTTAGAAGACAGGAGAGGGAATATAAGAGGAGAATCGATACTTCCAGACCTTGTCTTTTGGCTCCTCAGGTTTATTGGGAGATTAAGGAGATGTTGTCTAAACAAGGTAGGGTTAGTGCTAGGTTGTTGCAGAGGATAAGGGACCGTGTTCAGAAGTGGTATCATGATGAAGGTTATGCTTGTGCTCAGGTTGTTAATTTTGGTAACCTTAATACACGTGAGGTTGTTTGCGAGGTTGTTGAAGGGGATATTACTCAGTTGTCTATTCAGTTTTTGGATAAACTTGGTAATGTTGTTGAAGGGAATACTGAAGTCCCTGTTGTTCAAAGAGAACTTCCTAGACAGCTTGAACCGGGTCATATTTTTAACATTGAAGCTGGGAAGCAAGCTTTGAGGAACATAAATTCCCTTGCTTTGTTTTCCAACATTGAGGTGAATCCAAGGCCCGATGAGAAGAATGAGGGAAGTATAATTGTTGAAATTAAGGTCAAAGAGTTGGAGCAGAAGTCGGCTGAAGTTAGTACTGAGTGGAGTATTGTTCCTGGGCGAGGAGGGCGTCCAACATTGGCTTCCCTGCAGCCGGGAGGGACTATTACTTTTGAACATCGGAATCTGCAAGGATTGAATAGATCTCTTACTGGTTCAGTGACAACTAGCAACTTCTGGAATCCTCAGGATGATCTTGCATTTAAAATGGAGTATGCACATCCGTATTTGGATGGTGTACATAATCCACGCAACCGAACTCTCCGTGTAAACTGTTTCAATAGCCGAAAACTGAGCCCGGTGTTCACTGGGGGGCCAGGGGTGGATGAAGTGCCCTCAATATGGGTTGACCGTGCTGGTGTTAAAACCAATATCACTGAGAATTTTTCTCGTCAGAGTAAATTCACTTATGGATTAGTAATGGAAGAGATAATAACACGCGATGAAACCAATAATATCTGTTCCAATGGTCAAAGAGTTTTGCCTAATGGAGGAATTAGTGCAGATGGACCTCCAACCACCCTAAGTGGTACCGGTATCGATAGGATGGCGTTTTTACAGGCAAATATTACGCGGGATAACACAAGGTTTGTAAATGGAGCTATCATTGGAAGTAGGAACATGTTCCAGGTAGATCAAGGACTTGGTGTTGGCAGCAATTTCCCATTCTTTAACCGTCACCAATTAACCGTGACACGGTTTTTCCAACTGAAGTCTGTTGAGGAAGGTGCTGGCAAACCACCGCCGCCAGTGCTTGTCCTCCATGGCCACTACGGTGGCTGCGTAGGCGACCTCCCAAGTTATGATGCTTTTACTCTTGGGGGTCCCTACTCTGTTAGGGGTTACAACATGGGTGAGATTGGAGCAGCCAGAAACATCCTTGAGCTGGCAGCTGAGGTACGAGTACCTGTCAAAGGTACACACGTGTACGCCTTTGCAGAACACGGCACTGATCTAGGAAGTTCAAAATATGTCAAAGGAAATCCAACAGAAGTCTATAGGAGAATGGGTCAGGGGTCCTCTTATGGTGTTGGTATGAAGCTTGGTTTAGTGAGAGCAGAATATGCCGTTGATCATAACTCAGGAACAGTTACTGGCTTAGTGCTTGCTATGCACGCTCTTGTAAGAACCACAACATCCATAAAAATTCCCGCCAAAAATGCTATCCTCAACCATCGACTCCTTCGTTCAGAACCTGAAGCCTACGCTGAACTCATCGAAACATACACACGTGATCGATCACTGCAGCAAGGAAAGAAGCTTCATGCGCACTTAACCATCAATGGCTACGCGCGTTTCAACGTTGTCGCATCCAATCTCATAGCTCTATATGCAAGCTGTAGCCAACTCTCCCTTGCCCGAAAACTGTTCGACAAAATTCCCCAAACAAATGTTCGCCGTTGGACTGCCCTCATCAGTACATGCGCTCGTTGCGGCTTCTATGATCACGCTTTATCCGTGTTCTCCGAGATGCAAACTCTCCATGGATTGAAACCCAATAATGTCTTCGTGATTCCTAGTGTTCTCAAAGCCTGCGGCCACGTCGGTGACCGAATCTCCGGAGAGAAAATACATTGCTTGGTTTTGAAGTGTTCATTTGAGATTGATGCTTTTGTTTCGAGTGCGTTGATTGTTATGTACTCCAAGTGTAGTAAAGTTGAGGATGCACGTAAGGTGTTTGATGGAATGGCTATGAAGGATTTGGTGGCGTTAAACGCTGTTGTTTCTGGGTATGCTCAACAAGGACTTCCGAATGAGGCATTCGGTCTAGTGAAAAATATGAAATTGATGGGTATGAACCCAAATGTGGTGACTTGGAACGCTTTGATATCTGGGTTTGCACAGAGATGTGACCGAGCAATGGTTTCTGAAATTTTCAGGTTGATGATTGAAGATGATGTTGAGCCTGATGTGGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTTGTAACGACGAAGCTTTTGATACGTTTAAGCAAATGTTGGGTCATGGGTTATGTCCTACTTCGGCTACTGTCAGCGCCCTTCTGCCAGCTTGTGCTACTGCTGCAAGAGTGAGGTTTGGGAAAGAAATTCATAGCTATGCTTTGGTGATTGGTGTGGAGGGTGATGTATATGTAAGGAGTGCTTTGGTTGACATGTATGCAAAATGTGGGTTTATTTCTGAAGCAAGGACACTGTTTTATAAGATACCGGAGAAGAACACAGTGACAATGAACTCTATGATTTTTGGCTATGCGAATCATGGGTATTGCGAAGAAGCTATTGAGCTCTTCAATCGGATGGAGATGGAAGAGGAAGTAAAGCCGGATCATTTAACTTTCACGGCAACTCTCACAGCTTGTAGCCATGTTGGCGATATTGAACTTGGACAGAGGCTGTTCAAGATTATGCAAGAGAAATACTGCATTGAGCCACGACTGGAGCATTATGCATGCATGGTGGATCTTTTAGGTCGAGCAGGGAAACTTGAGGAAGCGTATGGCATAATCAAGACAATGCCTATGGAACCCGATTTGTTTGTGTGGGGTGCATTGTTGGCTGCTTGTAGAAATCATGGGCATTTGGAGCTTGCAGAAGTGGCTGCTCAGCATTTGTTGGAGTTGGAACCCGAGAGTGCTGCAAACCGTCTTCTGTTGTCGAGTTTGTATGCAGATGCTGGTAAATGGGGAAAGGTTGAGCGAATCAAGAAAAGGATAAAGAAAGGAAAACTTAGAAAACTTCAAGGGTTGAGTTGGATAGATAATGTATAA 4071 0.4453 MSSSFITSNRLTPTLSPPPHPLRRRNNRISRPSSFKCHLSSSDDHTDSSNSSSLFKTLSTTLAVSSAASALFLTDSLHFLIPDLSGGNANGGLGGSGGGSSSGGGGGGGGNWFNGDEGSFWSRILSPSRAIADEPKSQDWDSHELPVNITVQLNKLSGFKRYKISEITFFDRKTKRKIGTEDSFLDMVSLKPGGVYTKAQLQKELESLASCGMFEKVDMEGKTNADGSMSLTISFAESMWEKAERFRCINVGLMGQSKPVEMDPDMTEREKLEFFRRQEREYKRRIDTSRPCLLAPQVYWEIKEMLSKQGRVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTREVVCEVVEGDITQLSIQFLDKLGNVVEGNTEVPVVQRELPRQLEPGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGSIIVEIKVKELEQKSAEVSTEWSIVPGRGGRPTLASLQPGGTITFEHRNLQGLNRSLTGSVTTSNFWNPQDDLAFKMEYAHPYLDGVHNPRNRTLRVNCFNSRKLSPVFTGGPGVDEVPSIWVDRAGVKTNITENFSRQSKFTYGLVMEEIITRDETNNICSNGQRVLPNGGISADGPPTTLSGTGIDRMAFLQANITRDNTRFVNGAIIGSRNMFQVDQGLGVGSNFPFFNRHQLTVTRFFQLKSVEEGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEVRVPVKGTHVYAFAEHGTDLGSSKYVKGNPTEVYRRMGQGSSYGVGMKLGLVRAEYAVDHNSGTVTGLVLAMHALVRTTTSIKIPAKNAILNHRLLRSEPEAYAELIETYTRDRSLQQGKKLHAHLTINGYARFNVVASNLIALYASCSQLSLARKLFDKIPQTNVRRWTALISTCARCGFYDHALSVFSEMQTLHGLKPNNVFVIPSVLKACGHVGDRISGEKIHCLVLKCSFEIDAFVSSALIVMYSKCSKVEDARKVFDGMAMKDLVALNAVVSGYAQQGLPNEAFGLVKNMKLMGMNPNVVTWNALISGFAQRCDRAMVSEIFRLMIEDDVEPDVVSWTSVISGFVQNFCNDEAFDTFKQMLGHGLCPTSATVSALLPACATAARVRFGKEIHSYALVIGVEGDVYVRSALVDMYAKCGFISEARTLFYKIPEKNTVTMNSMIFGYANHGYCEEAIELFNRMEMEEEVKPDHLTFTATLTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYACMVDLLGRAGKLEEAYGIIKTMPMEPDLFVWGALLAACRNHGHLELAEVAAQHLLELEPESAANRLLLSSLYADAGKWGKVERIKKRIKKGKLRKLQGLSWIDNV 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03615 1356 Gene3D membrane protein fhac 160 234 - -
Car06g03615 1356 Gene3D membrane protein fhac 358 440 - -
Car06g03615 1356 Gene3D Tetratricopeptide repeat domain 1135 1202 IPR011990 GO:0005515
Car06g03615 1356 Gene3D Tetratricopeptide repeat domain 1056 1134 IPR011990 GO:0005515
Car06g03615 1356 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 65 802 IPR039910 -
Car06g03615 1356 Pfam E motif 1292 1354 IPR046848 -
Car06g03615 1356 PANTHER PROTEIN TOC75-3, CHLOROPLASTIC-RELATED 65 802 - -
Car06g03615 1356 Gene3D Tetratricopeptide repeat domain 1203 1355 IPR011990 GO:0005515
Car06g03615 1356 Gene3D Tetratricopeptide repeat domain 959 1055 IPR011990 GO:0005515
Car06g03615 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1038 1072 IPR002885 -
Car06g03615 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1174 1209 IPR002885 -
Car06g03615 1356 TIGRFAM 3a0901s03IAP75: chloroplast envelope protein translocase, IAP75 family 95 799 IPR005689 GO:0006886|GO:0015450
Car06g03615 1356 Pfam Omp85 superfamily domain 478 784 IPR000184 GO:0019867
Car06g03615 1356 MobiDBLite consensus disorder prediction 1 51 - -
Car06g03615 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 900 935 IPR002885 -
Car06g03615 1356 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 464 800 - -
Car06g03615 1356 Gene3D Tetratricopeptide repeat domain 804 958 IPR011990 GO:0005515
Car06g03615 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1003 1037 IPR002885 -
Car06g03615 1356 Pfam PPR repeat 1250 1274 IPR002885 -
Car06g03615 1356 Pfam PPR repeat 977 1001 IPR002885 -
Car06g03615 1356 Pfam PPR repeat 904 928 IPR002885 -
Car06g03615 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1073 1107 IPR002885 -
Car06g03615 1356 Pfam PPR repeat family 1173 1222 IPR002885 -
Car06g03615 1356 Pfam PPR repeat family 1002 1050 IPR002885 -
Car06g03615 1356 Pfam PPR repeat family 1072 1120 IPR002885 -
Car06g03615 1356 TIGRFAM PPR: pentatricopeptide repeat domain 1040 1074 IPR002885 -
Car06g03615 1356 TIGRFAM PPR: pentatricopeptide repeat domain 1176 1210 IPR002885 -
Car06g03615 1356 TIGRFAM PPR: pentatricopeptide repeat domain 904 936 IPR002885 -
Car06g03615 1356 TIGRFAM PPR: pentatricopeptide repeat domain 1075 1108 IPR002885 -
Car06g03615 1356 TIGRFAM PPR: pentatricopeptide repeat domain 1006 1039 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03615 Car-Chr6 67476806 67483243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03615 889 1354 Glycoside Hydrolase AT3G49170 33.865 2.55e-82 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03615 - - cam:101514388 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03615 06 67476806 67483243 Car06g03615 06 67476806 67483243 ECH