Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03607 ATGATTTTTTCAAGAATTGGGCGTTCCCTATCGCGCTCTTCTCGCGTTAGAAATTTGTTGCAAGGTGATGCAAGATTGGGAACACTTTCTGGAATTCCGCGAACAAATGTTTATTCAGATGGAGTGGAAGGGGGATTAGGGTTTTTCAGGGGTTACTTATCTTCTGCTACAGCTCTCAATAATGGCTTCGTTTCTAATTCGCCTTATTTTAAATCTGTTGTTGCAAACCCTAGGTTTCTTCGCTTGTTTTCTAGTGAATCCCCAAAGAAGAAGAATTATGAAAAGTTTTATCCTAAGGAAAAGAAAGAAGTTCCAAAGAACGATAAAAAGAATGAGTCTGAAGACGAGTCGAAGTCAAACACAGATGATCAAGGAGGTTTTCAAGAAGCTTTCATGAAACAATTTCAAAATTTTCTCACCCCATTATTGGTGATGGGGCTATTTCTTTCATCCTTTTCTTTTGGTTCTCGTGAGCAGCAGCAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTCACAAACAAATCGGTTGCTAAAATATATGTAAGGACCTCCCCCAAGAATCAAACAGACAGTGAAGTACTCCAAGGAACCCTTCCTGCAAAAGGATCTGGTGGCCAATATAAGTATTTTTTCAACATTGGAAGTGTCGAGTCTTTTGAGGAGAAGTTAGAAGAAGCACAAGATGCTCTAGGCGTTGACCCTCACGATTTTGTACCTGTTACGTATTCATCTGAAATGGTTTGGTACCAGGAGTTGTTGAGATTTGCTCCAACTCTGTTGCTTTTGGGATCTCTCTTCTACATGGGAAGAAGAATGCAAGGTGGACTTGGTGTTGGTGGCGGCGCCGGTGGTAAGGGTGGTCGAGGAATATTCAACATAGGAAAAGCACATATTACTAAAGTAGACAAAAATGCCAAAAACAAGGTCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAACCCTAAGAAATATGAAGAGCTTGGTGCCAAAATTCCAAAAGGTGCTCTCCTGGTTGGTTCCCCTGGCACAGGGAAAACCCTTTTAGCGAAGGCAACTGCAGGGGAATCTGGTGTGCCATTTCTTTCTATGTCTGGTTCTGATTTCATAGAAATGTTTGTTGGTGTTGGACCATCTAGAGTGAGGAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAGTATTTATTGATGAGATTGATGCTATTGGACGGGCAAGGGGTCGGGGAGGTTTCTCTGGTGGAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACGGCTGGAGTTGTTGTGCTGGCAGGAACGAATAGACCTGATATATTAGACAAAGCCCTACTTAGGCCTGGGCGTTTTGACCGCCAGATAACTATTGATAAACCTGATATCAAAGGTCGTGAACAGATATTTCAGATTTACTTGAAAAAGATCAAACTTGACCACGAGCCTTCATATTATTCACAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGGGCAGACATTGCTAATGTTTGTAATGAAGCTGCTTTGTTTGCTGCAAGGACTGATGAAACTCAAGTCACAATGGATCATTTTGAGGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAAAACTTGGTAATAAGTAAAGTGGAAAGGCGTACTGTTGCTTATCATGAAGCAGGCCATGCTGTTGTAGGTTGGTTCTTGGAACACACTGAGCCATTGTTGAAAGTAACTATTGTTCCTCGTGGAACAGCAGCTCTTGGGTTTGCCCAGTATCTTCCAAATGAGAACCTTCTCATGACAAAGGAGCATCTTTTTGATAGGACTTGCATGACCCTTGGTGGTCGGGCTGCCGAGGAGGTCATTCTCATTGGGACAATCACAACTGGAGCACAAAATGACTTGGAGAAAGTAACCAAGATGACAGAGGACTCATATGGGATGGCCAAACCATACAGCAGCAAAACTGGTGCAATCATCGATACTGAAGTGCGAGAATGGGTGAACAAAGCCTATGAACACACCTTACAGCTTATAGAGAAACACAAGGAGCAAGTAGCTCAAATTGCAGAGTTGCTGCTCGAAAAAGAAGTACTTCACCAGGATGACTTGCGTCAAGTCTTGGGTGAGCGACCCTTCAAAAATGCTGAGCTCAGCAATTATGATAGATTTAAACTTGGGTTTCAAGAGGACGACAAGGAGGGTGGTGGGTCTTCTTCACCTCTAGATCCTGAAGTTGTTCCAACATAG 2343 0.4247 MIFSRIGRSLSRSSRVRNLLQGDARLGTLSGIPRTNVYSDGVEGGLGFFRGYLSSATALNNGFVSNSPYFKSVVANPRFLRLFSSESPKKKNYEKFYPKEKKEVPKNDKKNESEDESKSNTDDQGGFQEAFMKQFQNFLTPLLVMGLFLSSFSFGSREQQQISFQEFKNKLLEPGLVDHIVVTNKSVAKIYVRTSPKNQTDSEVLQGTLPAKGSGGQYKYFFNIGSVESFEEKLEEAQDALGVDPHDFVPVTYSSEMVWYQELLRFAPTLLLLGSLFYMGRRMQGGLGVGGGAGGKGGRGIFNIGKAHITKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGSPGTGKTLLAKATAGESGVPFLSMSGSDFIEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGREQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALFAARTDETQVTMDHFEAAIDRIIGGLEKKNLVISKVERRTVAYHEAGHAVVGWFLEHTEPLLKVTIVPRGTAALGFAQYLPNENLLMTKEHLFDRTCMTLGGRAAEEVILIGTITTGAQNDLEKVTKMTEDSYGMAKPYSSKTGAIIDTEVREWVNKAYEHTLQLIEKHKEQVAQIAELLLEKEVLHQDDLRQVLGERPFKNAELSNYDRFKLGFQEDDKEGGGSSSPLDPEVVPT 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03607 780 Pfam ATPase family associated with various cellular activities (AAA) 360 492 IPR003959 GO:0005524|GO:0016887
Car06g03607 780 ProSitePatterns AAA-protein family signature. 463 481 IPR003960 GO:0005524|GO:0016887
Car06g03607 780 MobiDBLite consensus disorder prediction 758 780 - -
Car06g03607 780 CDD AAA 356 493 - -
Car06g03607 780 Pfam AAA+ lid domain 522 561 IPR041569 -
Car06g03607 780 Pfam Peptidase family M41 576 680 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car06g03607 780 PANTHER ATP-DEPENDENT PROTEASE 29 766 - -
Car06g03607 780 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 259 675 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car06g03607 780 Pfam FtsH Extracellular 140 246 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Car06g03607 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 566 IPR027417 -
Car06g03607 780 MobiDBLite consensus disorder prediction 94 122 - -
Car06g03607 780 SMART AAA_5 355 495 IPR003593 -
Car06g03607 780 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 764 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car06g03607 780 Gene3D Peptidase M41 576 756 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car06g03607 780 Gene3D - 494 570 - -
Car06g03607 780 SUPERFAMILY FtsH protease domain-like 576 745 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car06g03607 780 Gene3D - 303 492 IPR027417 -
Car06g03607 780 MobiDBLite consensus disorder prediction 94 123 - -
Car06g03607 780 Gene3D - 145 258 - -
Car06g03607 780 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 29 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03607 Car-Chr6 67380263 67386126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03607 1 780 Miscellaneous Gene Families AT2G29080 71.463 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03607 K08956 - gmx:100806656 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03607 06 67380263 67386126 Car06g03607 06 67380263 67386126 ECH