Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03587 ATGGGTCAGGGGTTGAGTTGCAGAGGTAGTAATGAACATGGACTCTTTCGTGCTGTTCAACATGGGGACCTTCAAACTGTTGCTACTCTTTTACAGACACACCCTTCTCTTTTGCATCGCACTACTGTTTATGACCATCATTCCCCTCTTCATATTGCTGCTGCCAATGGTCAGATCCAGGTTTTATCTAGGCTTTTGGATAGATCTGCAAATCCTGATGTGTTGAATCGCCAAAAGCAGACCCCACTTATGTTGGCAGCAATGCATGGAAAGATTGATTGTGTGGAAAAGCTTCTTGAAGCTGGTGCTAATGTTTTAATGTTTGATGTGTGTCATGGAAGAACTTGCTTGCACTATGCTGCTTACTATGGTCATTCTTCTTGCCTAAAGGCAATACTTTCTGCTGCTCAATCTAGTCCTGTGGCTGCTTCTTGGGGTTTTGCACGGTATGTGAATATTCGAGATGGTAGAGGTGCTACACCATTGCATTTGGCAGCTCGTCAAAAGCGGTCTGATTGTGTGCACACTCTGTTGTGTAGTGGAGCTCTTGTTTGTGCTTCTACTAGTAGATATGGATGTCCTGGGAGCACTCCTCTTCATTTAGCAGCCAAAGGAGGATCTCTGGATTGCATCCGCGAACTATTGGCATGGGGCGCAGATCGTCTTCAACGTGATGCATCTGGGCGGATACCGTATGTGGTTGCTCTGAAGCACAGACACGGAGCATGTGCAGCATTGCTAAATCTTGCATCGGCGCAGCCTCTTGTCTGGCCATCATCATTGAAGATAATCAGCGATCTTAATCCAGAGGCTAAAGCTTTATTAGAGCAGGCGTTGATGGACGCGAACAAGGAAAGGGAGAAAAATATATTGAAAGGCAGTTCTTACTCTCTTCCATCTCCATCGCACTCTGATGGGATGGATGACAATATTTCTGAGGTCAGCGAGACAGAACTATGCTGCATCTGCTTTGAGCAGGTATGTACAATTGAAGTCCAGGACTGTGGCCATCAAATGTGTGCACAATGCACACTAACACTCTGTTGCCACAACAAACCCAACACTTCTACTTCTCATCCTACCCCACCGGTTTGTCCATTCTGTCGAAGCACCATAGCTAGACTCGTGGTTATCAAGATCGAAACTCACGAAGACATTGACCAAGACAGCGCTAATACCAGTTGTTTCAAGCCAAGCAAGTCAAGGAAATTTCGGAACTTGAACGAGGGAAGCAGCAGCAGTTTCAAGGGATTATCCAATGTAAATTCGTTCGGAAAAATGAGCGGTCTTAGTTCTGGTATGATCGCAAGTGAAAACGAATGGATTGATGATAAGCCACAATGA 1344 0.4539 MGQGLSCRGSNEHGLFRAVQHGDLQTVATLLQTHPSLLHRTTVYDHHSPLHIAAANGQIQVLSRLLDRSANPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARYVNIRDGRGATPLHLAARQKRSDCVHTLLCSGALVCASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHGACAALLNLASAQPLVWPSSLKIISDLNPEAKALLEQALMDANKEREKNILKGSSYSLPSPSHSDGMDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNKPNTSTSHPTPPVCPFCRSTIARLVVIKIETHEDIDQDSANTSCFKPSKSRKFRNLNEGSSSSFKGLSNVNSFGKMSGLSSGMIASENEWIDDKPQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03587 447 Gene3D - 144 197 IPR036770 -
Car06g03587 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Car06g03587 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Car06g03587 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Car06g03587 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 444 - -
Car06g03587 447 Gene3D - 198 253 IPR036770 -
Car06g03587 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Car06g03587 447 Gene3D - 9 143 IPR036770 -
Car06g03587 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Car06g03587 447 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Car06g03587 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Car06g03587 447 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Car06g03587 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Car06g03587 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Car06g03587 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Car06g03587 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Car06g03587 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Car06g03587 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Car06g03587 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Car06g03587 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Car06g03587 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Car06g03587 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Car06g03587 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Car06g03587 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 444 - -
Car06g03587 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Car06g03587 447 SUPERFAMILY RING/U-box 319 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03587 Car-Chr6 67156897 67160555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03587 12 330 Miscellaneous Gene Families AT5G60070 27.003 1.35e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03587 - - gmx:100800611 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03587 06 67156897 67160555 Car06g03587 06 67156897 67160555 ECH
Car01g02576 01 51470235 51474007 Car06g03587 06 67156897 67160555 PCT