Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03578 ATGGCGTCCCAAGCCAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGCAAACATCCTGTCGATGGATTTTCTGCTGGTTTGGTTGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGACCCCCTGATACTCTCTATGAGGGAGGGTTTTTCAATGCCATTATGAGTTTTCCTGCCAATTACCCGAATAGTCCACCATCCGTGAAATTTACCTCAGATATATGGCACCCTAATGTATATCCTGATGGCCGGGTTTGCATATCAATCCTTCATCCTCCCGGTGACGATCCTAATGGTTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGTCCTAACGACGAATCTCCTGCAAATGTTGAAGCTGCTAAGGAGTGGAGAGATAGTAGAGATGATTTCAGGAAGAAGGTTGGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4411 MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPANYPNSPPSVKFTSDIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDSRDDFRKKVGRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03578 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Car06g03578 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Car06g03578 166 SMART ubc_7 7 164 - -
Car06g03578 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Car06g03578 166 CDD UBCc 17 159 IPR000608 -
Car06g03578 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Car06g03578 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Car06g03578 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Car06g03578 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03578 Car-Chr6 67002577 67005955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03578 11 131 Miscellaneous Gene Families AT3G17000 32.308 2.57e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03578 K10575 - gmx:100305813 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03578 06 67002577 67005955 Car06g03578 06 67002577 67005955 ECH
Car06g03578 06 67002577 67005955 Car01g02573 01 51433197 51437380 ECH
Car01g02573 01 51433197 51437380 Car06g03578 06 67002577 67005955 PCT