Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03559 ATGGATATTGATCTTTCTCCTCAATTGGCGAAGAAGGTGTACGGAGGTAATGGTGGATCGTATTACAGTTGGTCACCTTCCGAGCTTCCAATGTTGCGTGAAGGGAACATTGGTGCTGCAAAATTAGCTCTTGAGAAAAATGGTTTTGCTCTTCCTCGTTACTCTGATTCTTCTAAAGTTGCTTATGTTCTACAAGGAAGTGGAGTTGCTGGAATTGTACTCCCAGAATCAGAAGAGAAAGTTATTGCAATTAAGGAGGGCGATGCTTTAGCACTCCCCTTTGGTGTTGTGACATGGTGGTTCAACAAGGAGGACACTGAGTTGGTTGTTCTGTTCTTGGGAGATACTTCGAAAGCACACAAAACTGGCGAGTTTACCGATTTTTTTCTGACTGGTTCTAACGGAATTTTTACTGGATTTTCAACCGAGTTTGTGGGGAGAGCTTGGGACTTGCATGAAGAAAACGTGAAGACCCTTGTCGGAAAACAATTGGGTCAAGGGATTGTGAAGCTTGATGGAAGCATCAACCTTCCTCAGCCTAAAGAGGAACACAAGAAGGGTTTGGCCTTGAACTGTTTAGAGGCTCCATTGGATGTTGACATTAAGAATGGTGGAAGGGTTGTTGTGTTGAACACTAAGAACCTCCCTTTGGTTGGCGAGGTTGGTCTTGGAGCTGACCTTGTGAGGATTGATGGAAGAGCTATGTGCTCTCCTGGATTCTCTTGTGATTCTGCTTTACAGGTTACTTACATTGTTCGTGGGAGTGGCCGTGTTCAAGTTGTTGGTATCGATGGCCGTAGAGTTCTGGATACAACTTTAAAGGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTCGTCTCAAAGATTGCTGACAATGATGGAATGGAGTGGTTTTCTATCATCACTACCCCTAATCCTGTATTTACACACATGGCTGGAAGCTCATCGGTGTGGAAGGCGTTATCACCGACGGTTCTGCAGGCTGCTTTCAACGTCGATGCAGAAATCGAGAAATTCTTCCGTTCAAAGAGGACTGCTGACGCCATTTTCTTCCCTCCTTCAAATTAA 1071 0.4435 MDIDLSPQLAKKVYGGNGGSYYSWSPSELPMLREGNIGAAKLALEKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVIAIKEGDALALPFGVVTWWFNKEDTELVVLFLGDTSKAHKTGEFTDFFLTGSNGIFTGFSTEFVGRAWDLHEENVKTLVGKQLGQGIVKLDGSINLPQPKEEHKKGLALNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRIDGRAMCSPGFSCDSALQVTYIVRGSGRVQVVGIDGRRVLDTTLKAGNLFIVPRFFVVSKIADNDGMEWFSIITTPNPVFTHMAGSSSVWKALSPTVLQAAFNVDAEIEKFFRSKRTADAIFFPPSN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03559 356 CDD cupin_11S_legumin_N 4 173 - -
Car06g03559 356 Pfam Cupin 196 338 IPR006045 -
Car06g03559 356 Pfam Cupin 11 157 IPR006045 -
Car06g03559 356 CDD cupin_11S_legumin_C 198 353 - -
Car06g03559 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 347 - -
Car06g03559 356 SUPERFAMILY RmlC-like cupins 16 344 IPR011051 -
Car06g03559 356 PANTHER - 2 347 - -
Car06g03559 356 Gene3D Jelly Rolls 4 189 IPR014710 -
Car06g03559 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Car06g03559 356 SMART Cupin_1_3 195 339 IPR006045 -
Car06g03559 356 SMART Cupin_1_3 3 157 IPR006045 -
Car06g03559 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Car06g03559 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Car06g03559 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Car06g03559 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Car06g03559 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03559 Car-Chr6 66808885 66812134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03559 35 351 Miscellaneous Gene Families AT2G18540 22.616 1.78e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03559 - - gmx:100782055 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03559 06 66808885 66812134 Car06g03559 06 66808885 66812134 ECH