Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03539 ATGAATAGGTCGAGAACCGAAGGCTTAGTCTTCACAAAGGAACCTTTCATAGAGGATTTAGGTCCACGCAAAATAGCGGGTATTACGTATTCCACGCTTTCTGAAGCAGAAATCAGCAAAATCGGTGAAGTTCAAGTGTGGAAAGGTACTTACTATGATGCATTTCGAAAACCTGAAGCTGATGGCTTGTTGGATTCCCGCATGGGCCCTGCTAATAAGAGTCTTGTTTGTGCAACATGCCACGGGAACTTTGCTGACTGTCAAGGCCATTATGGATACTTACCACTTGTGCAACCTGTTTTCAATGTCGGATATTTGAATACAATGGTGAAAATACTGAAGTGCATTTGTAAGGGTTGTGCTGGTATTCTCCTTGATGAAGATACCCGAAAAAAATATTTGAAGAAAATGAGAAACTCTAAATTGGATGAGCTGCAGAAGATACAGTTGCTTGAATCTATAATGAAAAGATTTAGAAGTGCTAAGTTCATAAAGTGCCAAAGATGTGGATATATTAATGGAATAGTAAAGCTCACTAGGTCTACCCTGAGGATTGTTCATGACTGCTCACATGGTAAAAATGATGTTGTTTCTGAGCTCCAATCAGCTCTTTCTCATATGAAAGAATATAGGGCTACCAACGATTTGGCTTCTCGAAATCTTGACCCTAAATCGGTTCATTCCTTGTTTACCAAGATGAGTGATGAGGACTGTGCATTACTTTATCTTGCTGAAAGACCAGAAAAGCTCATCATAACAAACATAGCTGTGCCACCTATAGTTATTCGACCTTCAGTTATAATGGATGGATCACAGAGCAATGAAAATGACATAACAGAGAAGCTAAGGAAAATAATCCAGGCAAATGCTGCTTTGCACAAAGAACTAGAAGAATCAACCAAATTTCAGGGTGGTTTTGAAATGCTTCAATTCCTGGTTGCTCAATACATAAATAGTGATGTTAAAGGTGGGCCATACAGTATGCAAGCGAGCAAGCCTTTAACTGGTTTTGTTCAGCGCATTAAAGGGAAGCAGGGACGTTTCCGTAGCAACTTATCTGGAAAACGTGTTGAATATACTGGCCGGACAGTTATTTCACCTGATCCTAATCTAAAGATTACTGAGGTTGCAATTCCCATCCATATGGCTCGCATTTTGACTTATCCTGAGCGTGTTACACATCACAACATAGAGAAGTTGAGACAATGTTTGAGGAACGGTCCTGATAAGTATCCGGGTGCAAAGTTGCTTAGGCATGCTGGTGGTACCACATGGAATTTAAAAGTTTCTTGTAGGAAGCGCCTTGCTGATGAACTGAGATTTGGTGATATTGTTGATCGCCATTTGGAAGACGGAGACGTTGTTCTTTTCAACAGGCAACCAAGCTTGCATCGGATGTCTATGATGTGTCATAGGGCAAGGATTATGCCTTGGAGAACTTTGAGATTTAATGAATCTGTATGTAACCCATATAATGCTGATTTTGATGGTGATGAAATGAACCTACATGTTCCACAGACTGAGGAGGCTCGAACAGAGGCTCTTTTGTTGATGACGGTGCAAAACAATTTGTGCACGCCAAAAAACGGAGAAATTCTTGTTGCCTCTACGCAAGACTTCTTGACTTCTTCGTTTCTCATAACTAGGAAAGATACTTTTTATGATCGTTCTACTTTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATCCTATTGATCTGCCAACTCCTGCAATTATTAAGCCAGTTGAACTCTGGAGTGGTAAACAATTATTTAGCATTTTATTACGCCCACATGCAAATGTGAGGGTCTATGTGAACCTCACTGTAAAGGAGAAAACACACAACGCAAAGCTTGATGATAGGAAAAGAGAAATGAAAACAATGTGCCCTAATGATGGATTTGTTTATTTTCGCAATAGTGAGTTAATCTCCGGACAACTTGGAAAGGTGACTTTAGGAAATGGCAATAAAGATGGGCTTTTCTCTGTGTTACTAAGAGACTATAAAGCACATGCTGCTGCTTCGTGCATGAATCGACTTGCTAAATTTAGTGCTCGTTGGATAGGTAATCATGGGTTCTCGATAGGCATTGATGATGTCCAACCAAAAGAGATACTGATCCATCGGAAAAAAGAAACAATTACGACAGGTTATAGTGAATGTGATGGTTTTATAGAAGCTTTCAATAAAGGAAAGCTAGAACTCGCACCTGGTTGTGATGCTGCTCAAACATTAGAGGCTAAGATATTTCAAAAATTAAATAGCTTACGTGATACAACAGCAAAGGTATGCATGCAAACATTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGCTCCAAAGGATCTCCTATCAATATCTGTCAAATGGTTGCCTGTGTTGGTCAACAGTCAGTTGGTGGTTGTCGTGCTGCTAATGGGTTCGTAGATCGGAGTCTTCCTCATTTCACTAAAAAAGCAAAAACCCCTGCTGATAAAGGTTTTGTTGCTAATTCCTTTTTCACTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGAGAGAAGGGCTCGTTGATACAGCGGTCAAAACTGCAGACACAGGATATATGTCTCGTAGATTAATGAAAGCTCTGGAGGACTTGTTTTTACATTATGATTACACTGTAAGAGATACCAATGGTGGCATTGTTCAGTTCTGTTATGGAGATGATGGCATGGATCCATCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGACCGGTTATTTCTCAAAAGCAAGGCCATATGCCCCAGCGATGGAGATGATATAATCTTATCTTCCTCAGATGTGTGTGAAGTAATTCGCAAGAAGCTTTCAGAAGTTGGTATGTCTAAGTTAGTGGAGAAGGATGCTTCAGAAAATGATATAATGTCAGTGGTGGGGTTCTCTGATGATTTCATAAAGTCTCTACAAGCCTTTGTCAAAGATAATACAAAATTAACAGAAGCAATCGCTGAGAATGATTCTAAAAATCTGACGAACCTGAAGAACTTTATTCCGAGGATATCTGGAATCAGCCGTAGGCAACTAGAGGTTTTTCTAGATATTTGTCTATCACGTTATCGTATCAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTAAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTCGGGGTTCCTCGCATCATAGAAATCATAAATGGAGCCAAAGATATTAAGACACCGATTATGACAGCAATACTTGAGAGGGATGATAATGCAAATACTGCAAGGATGGTGAAAGGTCGCATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATTAAAGTTGTTATGACTTCAAGATCAGCGACAGTTGTTATCTCACTGGACATGGAAAGAATCCAAGATGCACATCTGAATATAGATGCTCATACTGTAAAAGAATCAATTTTACGAACAGCAAAACTAAAATTGAAGGCAGAGAATGTTAAAGTTTTGGATATTAAAAAGCTTCAGGTGTATCCCCGATTATCTGGCAGAAATGAAATCCACTTTCAACTTAATATTCTTAAAAATTTGCTCCCATCAGTTGTGGTGAAGGGAGTTAAAACTGTTGAACGAGCTGTCCTAGAAATAGATAAAAAAGATAAAAAAGTTGAGAAGTTCGCATTACTGGTTGAAGGCACGGGCCTTCAACAGGTTTTGGGCATTGAAGGTGTTGATGGACGTAAAACTCGTAGTAATCATGTCATGGAAATGTTGAACGTTCTAGGAATTGAAGCTGCCAGAAGTACTATCATTGACCAGATACAGTATACAATGGGAAGTCATGGAATGAGTATTGACGTACGCCATATTATGCTTCTAGCAGATATTATGACTGTTAGGGGTCAAGTCCTCGGAATGACAAGACATGGAATTCAGAAGATGGGCAGAAGTGTATTGATGCTCGCATCATTTGAGAGTTCAACAGACCATCTTTTTGATGCATCCATGCGTGGAAGGGGTGACCCAATTGAAGGAGTGAGTGACTGCATAATTATGGGTAAACCAATTCGGGTAGGCACTGGAATGATTGATATCAAACAAAGGTTGGATCCTCCGGTGTTGCCTAAAGGGATCGATCCCATTCTATCCTTAGTCTGA 4200 0.3974 MNRSRTEGLVFTKEPFIEDLGPRKIAGITYSTLSEAEISKIGEVQVWKGTYYDAFRKPEADGLLDSRMGPANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCICKGCAGILLDEDTRKKYLKKMRNSKLDELQKIQLLESIMKRFRSAKFIKCQRCGYINGIVKLTRSTLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCALLYLAERPEKLIITNIAVPPIVIRPSVIMDGSQSNENDITEKLRKIIQANAALHKELEESTKFQGGFEMLQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHAGGTTWNLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKFSARWIGNHGFSIGIDDVQPKEILIHRKKETITTGYSECDGFIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRAANGFVDRSLPHFTKKAKTPADKGFVANSFFTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDGMDPSGMEGKNGKPLNFDRLFLKSKAICPSDGDDIILSSSDVCEVIRKKLSEVGMSKLVEKDASENDIMSVVGFSDDFIKSLQAFVKDNTKLTEAIAENDSKNLTNLKNFIPRISGISRRQLEVFLDICLSRYRIKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGAKDIKTPIMTAILERDDNANTARMVKGRIEKTNLGQVAKSIKVVMTSRSATVVISLDMERIQDAHLNIDAHTVKESILRTAKLKLKAENVKVLDIKKLQVYPRLSGRNEIHFQLNILKNLLPSVVVKGVKTVERAVLEIDKKDKKVEKFALLVEGTGLQQVLGIEGVDGRKTRSNHVMEMLNVLGIEAARSTIIDQIQYTMGSHGMSIDVRHIMLLADIMTVRGQVLGMTRHGIQKMGRSVLMLASFESSTDHLFDASMRGRGDPIEGVSDCIIMGKPIRVGTGMIDIKQRLDPPVLPKGIDPILSLV 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03539 1399 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1382 - -
Car06g03539 1399 Gene3D - 702 819 IPR038120 -
Car06g03539 1399 Gene3D RNA polymerase II, clamp domain 17 139 IPR044893 -
Car06g03539 1399 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1382 - -
Car06g03539 1399 Gene3D RNA polymerase ii 387 447 - -
Car06g03539 1399 Gene3D - 1332 1377 - -
Car06g03539 1399 Gene3D - 820 878 - -
Car06g03539 1399 CDD RNAP_III_RPC1_N 33 890 IPR035697 -
Car06g03539 1399 CDD RNAP_III_Rpc1_C 1036 1377 IPR035698 -
Car06g03539 1399 Gene3D RNA polymerase Rpb1, domain 3 528 701 IPR042102 -
Car06g03539 1399 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1382 IPR045867 GO:0003899|GO:0006351
Car06g03539 1399 SMART rpolaneu7 248 548 IPR006592 GO:0003677|GO:0003899|GO:0006351
Car06g03539 1399 Pfam RNA polymerase Rpb1, domain 2 354 520 IPR000722 GO:0003677|GO:0003899|GO:0006351
Car06g03539 1399 Pfam RNA polymerase Rpb1, domain 3 523 702 IPR007066 GO:0003677|GO:0003899|GO:0006351
Car06g03539 1399 Pfam RNA polymerase Rpb1, domain 4 728 833 IPR007083 GO:0003677|GO:0003899|GO:0006351
Car06g03539 1399 Pfam RNA polymerase Rpb1, domain 1 23 352 IPR007080 GO:0003677|GO:0003899|GO:0006351
Car06g03539 1399 Pfam RNA polymerase Rpb1, domain 5 840 1330 IPR007081 GO:0003677|GO:0003899|GO:0006351
Car06g03539 1399 Gene3D - 345 527 - -
Car06g03539 1399 Gene3D - 880 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03539 Car-Chr6 66491496 66534681 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03539 K03018 - gmx:100811292 2110.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03539 06 66491496 66534681 Car06g03539 06 66491496 66534681 ECH