LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g03523	ATGGCATCATCACGAATCATATCCCATTCTCCACCAAATCTCCACTGTCAATCTTCCCCCTTTGACTCCGTTAACCCCCTTCCATCCATCAATCTCAATTTCCCCTCAAAACGACATCGTAATCTCCGCATTCGCGCTTCCATTCGCGGCCACAGGGATAACGACATCAACGACACGTTGCAGTCCGTTGAATTGCGAACAAGCTCTGCCTCCGCACTCCCAAACGACGTCGTTTCCAAAGATCCACTCTCTCTTCCAAGGCCTTTATCTTCGAATCAGTTATCTAGTGCTGTTTCCGATGGTTCGCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTACAGTGAATCTGCGGCACAAAAGGCCTATCCAAATTGTGAAGCTGTGCCTTGTGAACAATTTGACACTGCTTTTGAAGCTGTTGAAAGGTGGCTTGTAGACAGAGCAGTTTTGCCAATTGAGAATTCTTTGGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCAGGCACAGGTTACATATAGTAGGAGAAGTAAAATATGCAGTCCATCATTGTTTGATGGCCAATCATGGTGTTAAACTTGAGAATTTGAAGCGTGTTCTTAGTCATCCACAGGCTCTTGCACAATGTGAGAACACCCTGGCAGGGTTGGGCTTGGTCAGAGAAGCAGTAGATGATACAGCGGGTGCTGCAAAACATGTTGCCCTCCATGAACTACAAGATGCAGGAGCTGTTGCTAGCTCTGCTGCTGCAGAGATCTATGGCTTAAATGTACTTGCTCGAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAGTGTTGGCGCGAGAACCAATACTTCCAGGCACAGACAGGCCATTTAAGACAAGTATAGTTTGTTCTTTAGAAGAGGGTCCTGGTATACTTTTCAAGGCCCTTGCTGTTTTTGCCCTGCGTCAAATTAATCTTTCAAAGATTGAAAGCCGGCCTCTGCGGAATCAACCTCTAAGAACATCTGATGATAACAACAAGTACTTTGATTATCTTTTCTATATTGATTTTGAAGCATCAATGGCTGATCAGAATGCACAAAATGCCTTAAGGCATCTAAAGGAGTTTGCTACATTCCTGCGAGTGCTGGGGAGTTATCCTATGGACACTAGCCACACTAGTATGGCGTAA	1173	0.4518	MASSRIISHSPPNLHCQSSPFDSVNPLPSINLNFPSKRHRNLRIRASIRGHRDNDINDTLQSVELRTSSASALPNDVVSKDPLSLPRPLSSNQLSSAVSDGSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVHHCLMANHGVKLENLKRVLSHPQALAQCENTLAGLGLVREAVDDTAGAAKHVALHELQDAGAVASSAAAEIYGLNVLARDIQDDSDNVTRFLVLAREPILPGTDRPFKTSIVCSLEEGPGILFKALAVFALRQINLSKIESRPLRNQPLRTSDDNNKYFDYLFYIDFEASMADQNAQNALRHLKEFATFLRVLGSYPMDTSHTSMA	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g03523	390	Gene3D	-	189	268	-	-
	Car06g03523	390	MobiDBLite	consensus disorder prediction	1	20	-	-
	Car06g03523	390	ProSiteProfiles	Prephenate dehydratase domain profile.	105	280	IPR001086	GO:0004664\|GO:0009094
	Car06g03523	390	Pfam	Prephenate dehydratase	106	282	IPR001086	GO:0004664\|GO:0009094
	Car06g03523	390	ProSitePatterns	Prephenate dehydratase signature 1.	256	278	IPR018528	GO:0004664\|GO:0009094
	Car06g03523	390	SUPERFAMILY	Periplasmic binding protein-like II	105	286	-	-
	Car06g03523	390	Gene3D	-	99	188	-	-
	Car06g03523	390	SUPERFAMILY	ACT-like	275	382	IPR045865	-
	Car06g03523	390	ProSitePatterns	Prephenate dehydratase signature 2.	320	327	IPR018528	GO:0004664\|GO:0009094
	Car06g03523	390	PANTHER	AROGENATE DEHYDRATASE	35	385	-	-
	Car06g03523	390	CDD	PBP2_Ct-PDT_like	105	282	-	-
	Car06g03523	390	CDD	ACT_CM-PDT	292	381	-	-
	Car06g03523	390	Gene3D	-	287	384	-	-
	Car06g03523	390	ProSiteProfiles	ACT domain profile.	294	381	IPR002912	-
	Car06g03523	390	PANTHER	PREPHENATE DEHYDRATASE P PROTEIN	35	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g03523	Car-Chr6	66249925	66254911	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g03523	K05359		-	gmx:100787387	600.512

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car06g03523	06	66249925	66254911	Car06g03523	06	66249925	66254911	ECH