Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03328 ATGACAACCGTTCCTTTGGTCTCAGCTTCCCTAAGAAGGCTTGAGGGGAAGGTGGCCCTGATCACCGGCGGTGCGAGCGGCATCGGAGAAGCAACCGCAAGACTGTTTTCCAAACACGGAGCTCAAGTGGTGATAGCTGACATCCAAGACGAAATGGGTCATTCTATTTGCAAAGACTTAAACAAATCAACTGCTTCCTACGTCCACTGTGACACAACAAAGGAAAAAGACATTGAAAACGCTGTGAACACAACCGTTTCCAAGTACGGTAAACTAGATATCATGTTTAACAATGCCGGAATAGTCGGTGTAAACAAAACCAATATACTTGAAAACAAGTTATCGGAATTTGAAGAAGTGATTAAAGTTAATTTGATTGGTGTGTTTCTTGGAACAAAACACGCTTCAAGGGTAATGATCCCAGCTCGACGGGGAAGCATAATTAACACAGCTAGTGTTTGTGGAAGCATAGGTGGTGGTGCTTCACATGCCTGTACAAGTTCAAAGCACGCCGTCTTAGGTCTAATGAAAAACACGGCGGTCGAGCTTGGACCGTACGGTATTCGGGTGAATTGTGTGTCACCTTATGTTGTTGCAACCCCATTGGCTAAGAAATTCTTTAAGCTTGATGATGAAGGGATTCAAGGGGTTTATTCTAACCTAAAGGGTGTTAATCTCGTGCCAGAAGATGTGGCTGAAGCTGCTTTGTACTTAGGAAGTGATGAGTCCAAATATGTTAGTGGTCACAATCTTGTCGTGGATGGAGGATTCACTGTTGGAAACAGTGGGTTTTGTATTTTTGAACAATCTGTTTGA 816 0.435 MTTVPLVSASLRRLEGKVALITGGASGIGEATARLFSKHGAQVVIADIQDEMGHSICKDLNKSTASYVHCDTTKEKDIENAVNTTVSKYGKLDIMFNNAGIVGVNKTNILENKLSEFEEVIKVNLIGVFLGTKHASRVMIPARRGSIINTASVCGSIGGGASHACTSSKHAVLGLMKNTAVELGPYGIRVNCVSPYVVATPLAKKFFKLDDEGIQGVYSNLKGVNLVPEDVAEAALYLGSDESKYVSGHNLVVDGGFTVGNSGFCIFEQSV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03328 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Car06g03328 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Car06g03328 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Car06g03328 271 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Car06g03328 271 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Car06g03328 271 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Car06g03328 271 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Car06g03328 271 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Car06g03328 271 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Car06g03328 271 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 264 - -
Car06g03328 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 259 IPR036291 -
Car06g03328 271 PANTHER MOMILACTONE A SYNTHASE 8 264 - -
Car06g03328 271 CDD secoisolariciresinol-DH_like_SDR_c 13 258 IPR045309 GO:0016616
Car06g03328 271 Pfam Enoyl-(Acyl carrier protein) reductase 23 258 - -
Car06g03328 271 Gene3D - 6 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03328 Car-Chr6 62371149 62372301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03328 14 267 Acyl Lipid Metabolism Gene Families AT1G63380 32.463 8.01e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03328 - - gmx:100782627 438.728