Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03317 ATGGGTGTGCCATCGTTCTTTAGATGGTTACTTAACAAATATCCAAAAGTTATTGAAGACATTAACACTAACACAAACACACCAACTGTTGAATGTCACAATCTTTATCTTGACATGAATTCCATTATCCATCCATGTTTCCATCCTTCGGATGATAATAGCAATGGTATTCCTCCAGCAACATTTGATGAAGTGTTTACTAATATGTTTCACTACATTGATCAGCTTGTTACTATTGTTAAGCCTCGCAAGCTATTGTACATGGCTATAGATGGAGTAGCTCCACGAGCAAAAATGAATCAGCAAAGGAGCAGGCGTTTTAAAACAGCTCAAGATAACCAAATGCGTGAAGCTGAGGAAGAGAGGTTAAGGAAGCAATTTGAAATGGAAGGCAAAAAGGTTCTTGCTAAACAAGAATGTGAAGTGTCAGATTCTAATATAATAACACCAGGGACAGAGTTCATGCATCAACTCTCAAAGGCTCTTAAAACCTATATCTCTTCAAGGATATCCTCTAATTCCTTATGGAAGAATATTATGGTAATTTTATCTGATGCTAATGTTCCTGGAGAAGGGGAGCATAAGATTATGTCATTCATAAGGAAACAACGTGGTCTTCCTGATTATGATCCAAACACTGTCCACTGCTTATATGGCTCGGATGCTGATCTTATAATGCTAGGTCTGTCAACACACGAGCCACATTTTTCAATTCTAAGAGAGTCTTATGAATCTATATGCTTGCAGCTTTTGCATATTTGGTTGCTGAGGGAATATCTTGAGTTAGAAATGAAGATACAAGATCCTCCCAAAAATTTAAAAATTGATTTTGAGCGGATTGTTGATGATTTTATCTTCATTTGTTTTTTTGCTGGAAATGATTTTCTGCCCCACCTACCATTTTTGGATATTCATGAGGGTGCTATTGATTTGCTTATGACTGTTTACAAGAAAGAGTTCAATAAACTTGGAGGATTTCTTGTGGACATAAATAAGATTGGACAGAAACATGCTCCTTTTGTGAAGTTATCAAGAGTTGAAAACTTCATACTTATGGTTGGTACATATGAAGAAAAAATATTCAAGAAAAGAGCTGCAATTAGAGAAAAGAAATTGAGAAAGCTTGTTAATGATTCTGAGACTTCAAAACAAAAAGAACAGAATGTAGATTACATGGACAATGACGACGGAAGTAGTTCAAGTTGCGCTCTTCGAATTAACAAGGCTCCATCTTCTAACGGTGTTTGTGTTGTGTCTGATGAAGTAATTTTGAAAAACACAAAGGAGTTAAAAGAGGAGTTGAACAAATGTATAAAAGAGAAAGGAGACTTATTAAAGAGTGGAGAGTTTCTGATTGACAAGATCAAATTGGGAACTACTGGATTTAAAGAAAGGTATTATAAAGAGAAATTTTCTGTTGAGGGCTCCACCAACGTGCAGAAGTACACTGAAGGATTGTTGTGGGTTCTTCAATACTATTTTTCAGGTGTTGCTTCATGGACATGGTTTTATCCATTCCACTATGGACCATTTGTTTCAGACTTAAAAGGTATGAGTCAAGTGAGAGTAAATTTTGAGAAAGGTGTTCCCTTTTTACCTTTTGATCAACTCTTAAGTGTTCTTCCTCCAAGGAGCTCTTATGCTCTTCCTAAAGCCTATGCACAATTGATGCTGGATGAGAAATCTAAAATATTTGACTTGTATCCTCAAAATTTTGAAATTGACATAGAAGGAAAGCGTTTCACTTGGCAGGGTATATGCAAACTTCCATATATAGATGAAAGAAGGCTTTTGGCTCAAACCAGAGACCTTGCGAAGGAATTAACTGAAAGTGAAGCAATAAGAAATTCTGTTGAAGTTGATAGCTTGTTGGTTAGTAACACTACCAAATTGGCAGAAAAAATTTGCTCACTCAAATCAAATAAGTTAGATACAAGCATAAGTGATGGCATTGGAGGCATCATAAGTCTTATCAATGAGAATGAGTGTGTTGAGAACAACACCAAAAATGAAGATTCTGTTTTTTGTGTTAATTACGAGCTTCCTATGGCTGGTACAATCCACATTCCTCATCTACTATACGGTGTTAACTTTCCTGAAAAGACAATCTTTGAATGTGACATAACTGAAACGGTACTTTGGCATGAAAATCAGCAATATGGTCAATTTGAGAGGCCACATAATCAAGGCAAATGGAGGAGTTCAAATAGAGATGGTTATATTTCCAAGTTTTCCACTAATGCAACAAATGGACGTGGAAGAGGCTTGTTACTAAATGCACCCCCTGAATTTATTCACAAAGGAGCTGCTGTTGGATGGGGTTTAGGTAGAGGAAATCCACAAAAGATTGATGATGAGATTCTAAATGAAAGAATGTCATCATTTTCTCCTTTTCAAAAACAACATAAAGATGGTGGTAGAGGACAAGGTAGGTTTCAACATAATTCCAACACTTCATTACCGTCTCAATGGAGTGACCCAAAGGAGAAAAGTCGTTGGTAG 2502 0.3629 MGVPSFFRWLLNKYPKVIEDINTNTNTPTVECHNLYLDMNSIIHPCFHPSDDNSNGIPPATFDEVFTNMFHYIDQLVTIVKPRKLLYMAIDGVAPRAKMNQQRSRRFKTAQDNQMREAEEERLRKQFEMEGKKVLAKQECEVSDSNIITPGTEFMHQLSKALKTYISSRISSNSLWKNIMVILSDANVPGEGEHKIMSFIRKQRGLPDYDPNTVHCLYGSDADLIMLGLSTHEPHFSILRESYESICLQLLHIWLLREYLELEMKIQDPPKNLKIDFERIVDDFIFICFFAGNDFLPHLPFLDIHEGAIDLLMTVYKKEFNKLGGFLVDINKIGQKHAPFVKLSRVENFILMVGTYEEKIFKKRAAIREKKLRKLVNDSETSKQKEQNVDYMDNDDGSSSSCALRINKAPSSNGVCVVSDEVILKNTKELKEELNKCIKEKGDLLKSGEFLIDKIKLGTTGFKERYYKEKFSVEGSTNVQKYTEGLLWVLQYYFSGVASWTWFYPFHYGPFVSDLKGMSQVRVNFEKGVPFLPFDQLLSVLPPRSSYALPKAYAQLMLDEKSKIFDLYPQNFEIDIEGKRFTWQGICKLPYIDERRLLAQTRDLAKELTESEAIRNSVEVDSLLVSNTTKLAEKICSLKSNKLDTSISDGIGGIISLINENECVENNTKNEDSVFCVNYELPMAGTIHIPHLLYGVNFPEKTIFECDITETVLWHENQQYGQFERPHNQGKWRSSNRDGYISKFSTNATNGRGRGLLLNAPPEFIHKGAAVGWGLGRGNPQKIDDEILNERMSSFSPFQKQHKDGGRGQGRFQHNSNTSLPSQWSDPKEKSRW 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03317 833 MobiDBLite consensus disorder prediction 810 826 - -
Car06g03317 833 PANTHER OS11G0157000 PROTEIN 1 737 - -
Car06g03317 833 Pfam Xrn1 helical domain 274 708 IPR041412 -
Car06g03317 833 Pfam XRN 5'-3' exonuclease N-terminus 1 241 IPR004859 GO:0003676|GO:0004527
Car06g03317 833 Gene3D - 1 135 - -
Car06g03317 833 Gene3D - 136 323 - -
Car06g03317 833 CDD PIN_XRN1-2-like 35 260 - -
Car06g03317 833 Gene3D - 517 618 - -
Car06g03317 833 PANTHER 5'->3' EXORIBONUCLEASE 1 737 IPR027073 -
Car06g03317 833 PIRSF Exonuclease_Xrn2 245 817 IPR017151 GO:0004534|GO:0005634|GO:0006139
Car06g03317 833 PIRSF Exonuclease_Xrn2 1 247 IPR017151 GO:0004534|GO:0005634|GO:0006139
Car06g03317 833 MobiDBLite consensus disorder prediction 795 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03317 Car-Chr6 62251933 62259548 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03317 - - cam:101491694 1655.57