Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03268 ATGGTCATATACCTCTCTCCCTCTCCACCTCTACATTCCAATTCCATCATCAAATTATCAAATTCTAAGTCACCCATTTCAGAATCTTCATTAAAGCTCAAAACCCATTTCTCAAAATCACTCTTTTCTTCTTCATTCACTTCCTCAAACGTGAAACTCACCACCAAGAAGCACTTTTTGCATGGAAATAGGATTGTTGAAGATTTTAGGACCTGTGCCATTGGTGGATTTGATTATGGAAACTTTGAGGGTCCTCAGTCTGTTCTTGAAGCTGCTGCAGTTTTGACAGCAATCATTGTTGTTCATGAAAGTGGTCACTTCCTTGCTGCTTCTCTTCAAGGGATTCATGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATATTAGCTAAGTTTAATGCAAAAAATGTTGAATATTCAATTAGAGCTTTTCCTCTTGGTGGATTTGTAGGGTTCCCTGATAATGATCCAGATAGTGATATTCCTGTTGATGATGAAAATTTGCTTAAGAATAGACCAATAATAGATAGAATCATTGTTGTTTCAGCTGGTGTTATTGCCAATGTAATTTTTGCATTAGTCATTATATTTGTTCAAATCCTTGCTGTTGGTTTGCCTGTTCAAGAAGTTTTTCCTGGTGTGAATGTGCCCGAGGTTCGGCCCTTTTCAGCCGCTTCTCGTGACGGATTGATTGCCGGGGATGTTATCATTGAAGTCAATGGAAGTGAGTTTCTTAAACCTGGTCCTAATGCTGTTTCTGAAGTTGTTGATGTCATTAAGAGAAGTCCTAAGAAATATGTTTTGCTTAAGGTTAAGAGGGGGGTGCAGGACTTTGAAATTAGGGTTACCCCAGATGAGAATTTTGATGGAACTGGTAAAATTGGAGTTCAGTTAGCTCCAAATGTGAAGTTATCTAAGGTTAGACCGAAAAATTTGGTGGAAGCTGTGACCTTTACTGCAAAAGAATTCTGGGGTCTATCGTCGAATGTTTTCGACGGGTTAAAGCAGACATTTTTAAACTTTTCTCAGTCAGCTAGTAAGGTTTCAGGTCCTGTAGCGATTATTGCTGTTGGCGCTGAAGTTGCGAGGTCGAACATCGATGGTCTTTACCAATTTGCAGCCATACTCAATATTAACCTTGCGATTATAAACCTTCTTCCTCTGCCTGCTTTGGATGGAGGAACATTGGCATTGATTCTCATTGAGGCTGCTAGGGGTGGGAGAAAGCTACCTTTGGAAGTAGAGCAACGGATTACGTCATCGGGAATTATGCTTGTTTTGATTCTTGGATTATACCTTATTATCCGTGATACCCTAAACCTTGATTTTATCAAGGAAATGTTGTAA 1344 0.3936 MVIYLSPSPPLHSNSIIKLSNSKSPISESSLKLKTHFSKSLFSSSFTSSNVKLTTKKHFLHGNRIVEDFRTCAIGGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDENLLKNRPIIDRIIVVSAGVIANVIFALVIIFVQILAVGLPVQEVFPGVNVPEVRPFSAASRDGLIAGDVIIEVNGSEFLKPGPNAVSEVVDVIKRSPKKYVLLKVKRGVQDFEIRVTPDENFDGTGKIGVQLAPNVKLSKVRPKNLVEAVTFTAKEFWGLSSNVFDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAIINLLPLPALDGGTLALILIEAARGGRKLPLEVEQRITSSGIMLVLILGLYLIIRDTLNLDFIKEML 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03268 447 CDD S2P-M50_PDZ_RseP-like 88 439 - -
Car06g03268 447 SUPERFAMILY PDZ domain-like 172 273 IPR036034 GO:0005515
Car06g03268 447 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 26 447 - -
Car06g03268 447 SMART pdz_new 200 274 IPR001478 GO:0005515
Car06g03268 447 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 26 447 IPR004387 GO:0004222|GO:0006508|GO:0016021
Car06g03268 447 CDD PDZ_metalloprotease 200 283 - -
Car06g03268 447 Pfam Peptidase family M50 92 428 IPR008915 GO:0004222|GO:0006508
Car06g03268 447 Pfam PDZ domain 217 272 IPR041489 -
Car06g03268 447 ProSiteProfiles PDZ domain profile. 202 273 IPR001478 GO:0005515
Car06g03268 447 Gene3D - 205 298 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03268 - - gmx:100800101 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03268 06 61096322 61098200 Car06g03268 06 61096322 61098200 ECH