Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03216 ATGAACCAAATCATCATTTTCACTCTAAAAAAACGCTACACAAAAACCCTTCTTCCAATATCTCATTACACAACCCTTTCACTCCCACTCCCACTCCAATCTCTACAATGTGGAACTTTACTTCAAGCACTCACCAACTCCAAATTCATCACACAAACACAACAACTCCACGCTTACTTAATCATTTCCGCCACACTTCTCCACAACACATACCTTTCCACAAAACTCGCCTCATGCTACGCTTCATGCGGTTTTATGCATCAAGCTCAACTCATATTCGACCAAATCTTGTTAAAGAATTCGTTTTTATGGAATTCTATGATAAGAGGCTATGCTTCTAATGGTAGTTCGTTGAAATCAGTTTTTCTTTACCGTCAAATGTTGAGGTTTGGACAAAAGCCTGATAAATTTACTTACCCCTTTGTTCTTAAAGCTTGTGGTGATCTTTTGGGGTTTGAAATGGGTAGGAAGGTTCATGCTTTGGTTTTGGTTGGTGGGTTTGAGTTAGATGTTTATGTGGGGAATTCGCTTGTTTCGATGTATTTGAAGTTCGGTGAGATGGAAATTGCGCGGTATCTGTTTGATAAAATGCCTGTCAGAGATTTGACTTCTTGGAACACTTTAATGTCTTGGTATGTTAAGAATGGTCAACCAGGGGAGGCTTTTATGGTTTTTGATGATATGAGAAGATATGGTGTTGTTGGAGATGGGACTACCATGCTTGCGATTCTTAGGGCATGTGGTGATCTTATGGATTTAAAGATGGGGAAAGAAGTTCATGGTTATGTTGTTAGGAATAGTGGGAATGGTAAAATGTGTAATAATAGTGAGTTTTTGATGAATTCCTTGATTGATATGTACTGTAACTGTGATTTCATATCTGGTGCTAGGAAATTGTTTGAAGGGTTAAAAGTGAAGGATAGTGTTTCATGGAATTCTTTGATTTCTGGCTATGAAAAGCGTGGGGATGCTTTTGAAGCTATTGAACTTTTCAGTCAAATGTTTAGGGGAGCTAAAGTTGCTGATGAAGTCACTGTTATTTCGGTGCTTGGTGCTTGTAATCAAATCTCCGCTTTGCTGTTGGGATCGTCTGTTCATTCTTATATTGTTAGAAAGGGTTTTGGAGGGAATACTGCGGTTGGAACTGCCCTTGTTATTATGCTTACAGGATTTGGAATTCATGGGAAGGGAAGAGAGGCTATGTCCATGTTTTATGAAATGTTGGGTAAAGATATTACTCCAGATCAGGGAATTTTCATTTCAGTTTTATCGGCCTGTAGTCATTCTGGATTAGTGGATGAAGGTAAAGAAATTTTTGATAAAATGATCCGAAAGTACAATGTGGAGGCTGGACCTACTCATTATTCATGCCTGGTAGATCTACTTGGAAGGGCAGGGAGGTTAGATGAAGCGTATGCAATTATCAACAATATGAAACTGAAACCTAATGAGGATGTTTGGATTGCTCTCCTTTCTGCTTGCAGATTACATCGGAATGTCAAGTTAGCTGAGATATCATCTCAAAAGCTTTTTGAAATGAATCCAAATAGGGTGAGTGGTTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACAGTGGAAGGATGTTGAAAAGGTGAGGGCATTGGTGAAAAATCAAAGATTGAGGAAACCGCCTAGTTACAGTTTTGTCGAGCTAAATAAGACGGTTCATCAGTTTTTCGTTGGAGATAAGTCTCACCATCAGTCAGATGATATATATGCCAAATTGGAAGACTTGAATGAAAAACTCAAGAAAGACGGGTACAAGCCTGACACGAGCTCGGTTCTCCACGATGTTGAAGAAGAAATAAAGGAGAAGATGCTCTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTCTTAATACTAGTCCAGGGACCACAATCAGAATAACAAAAAATCTTCGTGTGTGTGGAGATTGCCATACGGTAATGAAAATGATTTCTAAGCTCGTGAGCCGAGAGATTATCATGCGAGATATCTTGAGGTTTCACCATTTTAAAGATGGCCTATGCTCATGTGGTGGATATTGCATCGAAATATATACGCTCCAATATACTGAAGATGATTTCTCCTTAAAAGGAGAAGCCTCACTCTTAGACACCATGCGTTACCACTGA 2148 0.3934 MNQIIIFTLKKRYTKTLLPISHYTTLSLPLPLQSLQCGTLLQALTNSKFITQTQQLHAYLIISATLLHNTYLSTKLASCYASCGFMHQAQLIFDQILLKNSFLWNSMIRGYASNGSSLKSVFLYRQMLRFGQKPDKFTYPFVLKACGDLLGFEMGRKVHALVLVGGFELDVYVGNSLVSMYLKFGEMEIARYLFDKMPVRDLTSWNTLMSWYVKNGQPGEAFMVFDDMRRYGVVGDGTTMLAILRACGDLMDLKMGKEVHGYVVRNSGNGKMCNNSEFLMNSLIDMYCNCDFISGARKLFEGLKVKDSVSWNSLISGYEKRGDAFEAIELFSQMFRGAKVADEVTVISVLGACNQISALLLGSSVHSYIVRKGFGGNTAVGTALVIMLTGFGIHGKGREAMSMFYEMLGKDITPDQGIFISVLSACSHSGLVDEGKEIFDKMIRKYNVEAGPTHYSCLVDLLGRAGRLDEAYAIINNMKLKPNEDVWIALLSACRLHRNVKLAEISSQKLFEMNPNRVSGYVCLSNIYAAERQWKDVEKVRALVKNQRLRKPPSYSFVELNKTVHQFFVGDKSHHQSDDIYAKLEDLNEKLKKDGYKPDTSSVLHDVEEEIKEKMLWDHSERLALAFALLNTSPGTTIRITKNLRVCGDCHTVMKMISKLVSREIIMRDILRFHHFKDGLCSCGGYCIEIYTLQYTEDDFSLKGEASLLDTMRYH 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03216 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Car06g03216 715 PANTHER - 386 661 - -
Car06g03216 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 445 IPR002885 -
Car06g03216 715 Pfam PPR repeat 175 200 IPR002885 -
Car06g03216 715 Pfam PPR repeat 309 335 IPR002885 -
Car06g03216 715 Pfam PPR repeat 280 305 IPR002885 -
Car06g03216 715 Pfam PPR repeat 454 479 IPR002885 -
Car06g03216 715 Pfam PPR repeat 421 445 IPR002885 -
Car06g03216 715 Pfam PPR repeat 386 411 IPR002885 -
Car06g03216 715 Pfam DYW family of nucleic acid deaminases 595 686 IPR032867 GO:0008270
Car06g03216 715 Gene3D Tetratricopeptide repeat domain 263 359 IPR011990 GO:0005515
Car06g03216 715 Gene3D Tetratricopeptide repeat domain 152 262 IPR011990 GO:0005515
Car06g03216 715 Gene3D Tetratricopeptide repeat domain 27 150 IPR011990 GO:0005515
Car06g03216 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Car06g03216 715 Gene3D Tetratricopeptide repeat domain 360 564 IPR011990 GO:0005515
Car06g03216 715 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 386 661 - -
Car06g03216 715 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 116 387 - -
Car06g03216 715 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 40 120 - -
Car06g03216 715 Pfam E+ motif 564 589 IPR046849 -
Car06g03216 715 Pfam E motif 497 559 IPR046848 -
Car06g03216 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Car06g03216 715 Pfam PPR repeat family 201 247 IPR002885 -
Car06g03216 715 Pfam PPR repeat family 99 146 IPR002885 -
Car06g03216 715 PANTHER - 116 387 - -
Car06g03216 715 PANTHER - 40 120 - -
Car06g03216 715 TIGRFAM PPR: pentatricopeptide repeat domain 455 479 IPR002885 -
Car06g03216 715 TIGRFAM PPR: pentatricopeptide repeat domain 386 415 IPR002885 -
Car06g03216 715 TIGRFAM PPR: pentatricopeptide repeat domain 309 334 IPR002885 -
Car06g03216 715 TIGRFAM PPR: pentatricopeptide repeat domain 103 135 IPR002885 -
Car06g03216 715 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03216 Car-Chr6 59351617 59354315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03216 39 686 Glycoside Hydrolase AT3G49170 32.362 4.09e-119 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03216 - - cam:101497702 1412.51