Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03215 ATGGCTTCTTTGGACAAAAACATGCTGCTAAATTATGTTCCAGTTTATGTCATGCTTCCACTCGGAGTTGTTAGTGTTAATAACGTCTTTGAAGACCCAGAAGGACTTAAAGAACAACTTGTGCAGCTACGAGAAGCAGGTGTCGATGGTGTTATGGTTGATGTCTGGTGGGGGATCATTGAACAGAAAGGACCTAAACAGTATGACTGGAGTGCTTATAAGAGCTTGTTTCAACTCGTTCAAGAATGTGGTTTGAAACTGCAAGCTATCATGTCATTTCATCAATGTGGAGGGAATGTAGGGGATGTTGTTAACATCCCTATTCCACAGTGGGTACTTGATATTGGAGAATCAGATCCTGATATCTTCTACACCAACCGCTCCGGTACTAGGGACAAGGAGTATCTTACTATTGGTGTAGACAATAAGCCTATCTTTCATGGAAGAACAGCCATTGAAGTATACAGTGATTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAAAATCAGAGGTTATTATAGACATTGAAGTTGGGCTTGGCCCAGCAGGAGAACTCAGATACCCATCTTATCCACAAAATCAAGGATGGGTGTTTCCTGGAATTGGAGAGTTTCAGTGCTATGACAAATATTTAAAGGCAGAGTTCAAAGCGGCTGCAGCAAGGGCTGGCCATTCTGAATGGGAACTACCAGACGATGCTGGCACGTACAATGATGTACCAGAATCTACTGAATTCTTCAAAACAAATGGCACATACCTTACTGAGAAAGGGAAGTTCTTCTTAACTTGGTATTCTAACCAATTGCTGAATCATGGGGATGAAATCCTAGATGAAGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAATTTAGCAATCAAAGTCTCTGGAATCCACTGGTGGTACAAAGCTCAGAATCATGCTGCTGAACTCACTGCTGGATATTACAACCTTGACGATAGAGATGGATACCGTCCCATTGCAAAAATGGTATTGAGTGGAGGTTGGAGAGAAAACATTGAAGTTGCTGGAGAAAATGCACTTTCAAGGTATGATGCCACAGCTTATAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAAAGATGGCCCTCCAAAACATCGGATGTATGGAGTAACATACCTTCGTCTATCTGATGAACTATTGCAACAATCAAATTTTGATATATTCAAAAAATTTGTGGTAAAGATGCACGCTGATCAGGATTACTGTGAAGATCCTCAAGAGTACAATCATGGCATACCACCATTGAAGCGATCAGAACCAAAGATTCCTGTTGATGTTCTTAACGAAGCAACTAAGCCAATACCGCCGTTCCCCTGGGATTCAGAAACAGACATGAAAGTTGATGGTTGA 1389 0.4111 MASLDKNMLLNYVPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKAEFKAAAARAGHSEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFVVKMHADQDYCEDPQEYNHGIPPLKRSEPKIPVDVLNEATKPIPPFPWDSETDMKVDG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03215 462 ProSitePatterns Beta-amylase active site 1. 94 102 IPR018238 GO:0000272|GO:0016161
Car06g03215 462 Gene3D Glycosidases 334 462 - -
Car06g03215 462 PANTHER BETA-AMYLASE 6 332 457 - -
Car06g03215 462 PANTHER BETA-AMYLASE 6 4 333 - -
Car06g03215 462 ProSitePatterns Beta-amylase active site 2. 183 193 IPR018238 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 86 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 183 205 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 274 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 308 319 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 47 61 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 90 111 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 307 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 PANTHER - 4 333 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 Pfam Glycosyl hydrolase family 14 16 333 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 Gene3D Glycosidases 4 333 - -
Car06g03215 462 PANTHER - 332 457 IPR001554 GO:0000272|GO:0016161
Car06g03215 462 SUPERFAMILY (Trans)glycosidases 11 459 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03215 Car-Chr6 59344472 59347963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03215 2 460 Glycoside Hydrolase AT2G32290 62.146 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03215 K01177 - gmx:100787580 815.068