Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03176 ATGGCGACTCGAGACAACAACGGGTCGGAACTTGACCCGAATCTTGTTACGGCGGAGACACCAGAATTAGAGGCCCTGAATCCTGTTATGGCAGAGACACCAGAATCAGAGGCCCTGAATCCTGTTATGGCGGAGACACCAGAACCAGAGGCTGAAAAGCTCGTTATTTCGGGTGGTGAAATTCCTATTGAGGAATTTGTAGACAAGATTACATTAGAGGGTGACCCTCCTCCAGTTGAAGGAAATGGGAATgacgataaaaatgagaacgagaataaagatgacagtgaaagcgaaagtgaaagtgaaagtgaaagtgaaagtgagagtggaaaatcagaatctgagacttcttcatcatcaccgccatcatcatcaccgtcgtcgtcatcatcTGGTTCTAGCAGCgatgaagagaagatggttagtaggagtgccgttgatgatgatactgatgatgaGGTTATAGTAGGACCAATCAGGTCAAAGCATGAGATTCAGAAATTGCCTCCAGTTCCTCAGGTGGATGTGACTTTAGAACCACACCATCAAATGCTACCTGTGGGAGTTGTTATGTCGACTCTAGGTGCTAAAGTCATTGTGGAAGGAGTGGAGAAGCATGAACCTCTCAATGAGGGTTCTGTTCTCTGGCTGACTCAAAGCCGCAAACCACTAGGTTTTGTAGACGAAATCTTTGGACCAGTCAAAAATCCATATTACGTTGTGAGATACAATTCTGAAAGTGAAGTTCCTGCGGGTATCCAAGGGGGAACAACTTTGGTCTCGTTTGTTCCAGAATTTGCTGACCGCGTGCTTAATTTTAAGGAACTTTACTCGAAAGGCTACGATGCATCTGGTCCGTTTGATGAAGAGGTTAATGATGAAGTAGAGTTTTCAGACGATGAGAAAGAAGCTGAATACAAGAAAATGCAGCAAATGCAGAAAATGGCCAAGAGAGGGGTAAATGATCAAAATCCCAGCAAGAAAAGAAACAATAGAAAGAAATTTACACCAAATGAGCGTGTGTTACCTACTGCCCCTAATGCACCTGTGGCAGCACAGCGTGTGTTGCCTACTGTCCCTAATGCACCTGCATCAGCACCGTTGGTTAATCATGGAAACCGTTATTTTTCGGGCATTGGACAAGGTCAATTGGGGGGAACTACCACAGTTTCTCCATTTCAACCTTTAAATGCAGGTCCTAACTTTGCTACAAATGGAATGTGGCCAAATGGGACAACATTTCCACAGCAGCCACAGCCACAGCCTGATCTGCTTCCAAATGGATTTCCGACAAATGCCGGGTCATATTATCCACAAAACACACAATTTTCTCATCAGTTTCCTGCGCCAGGAATTCCATTTCAACAGCAGTTTAATCCCAATCAAAGATCTCTTTTCCCATCTATGATGCCTGGGGTACAGCCCAATATATTTACACAACAACCCATGTATGCACCGCCATTTGCGGGTCAAAACCAAATGACATTTGATTCGAGTTCACCTTTCCAACAGATGCAGCCACCTCCACAACCTATCTTTCAGGCACAACAGGGTTTTCCACCTTCGGAATTGCAGTCAGACAGAAACCTGAACTTGCATCCCAGTTCTATTCCTGGCAACCCCTCTCAATTTCATCCAGGTTCATCTGCTAGTCGAGGGAGGCCAACATTTCGTGGCGGCGGTAGGAGAGGGTGGCGACCTACTAAGTGA 1713 0.4051 MATRDNNGSELDPNLVTAETPELEALNPVMAETPESEALNPVMAETPEPEAEKLVISGGEIPIEEFVDKITLEGDPPPVEGNGNDDKNENENKDDSESESESESESESESGKSESETSSSSPPSSSPSSSSSGSSSDEEKMVSRSAVDDDTDDEVIVGPIRSKHEIQKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEPLNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRYNSESEVPAGIQGGTTLVSFVPEFADRVLNFKELYSKGYDASGPFDEEVNDEVEFSDDEKEAEYKKMQQMQKMAKRGVNDQNPSKKRNNRKKFTPNERVLPTAPNAPVAAQRVLPTVPNAPASAPLVNHGNRYFSGIGQGQLGGTTTVSPFQPLNAGPNFATNGMWPNGTTFPQQPQPQPDLLPNGFPTNAGSYYPQNTQFSHQFPAPGIPFQQQFNPNQRSLFPSMMPGVQPNIFTQQPMYAPPFAGQNQMTFDSSSPFQQMQPPPQPIFQAQQGFPPSELQSDRNLNLHPSSIPGNPSQFHPGSSASRGRPTFRGGGRRGWRPTK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03176 570 MobiDBLite consensus disorder prediction 489 551 - -
Car06g03176 570 MobiDBLite consensus disorder prediction 317 345 - -
Car06g03176 570 Gene3D Probable tRNA pseudouridine synthase domain 157 261 IPR038664 -
Car06g03176 570 Pfam Gar1/Naf1 RNA binding region 186 259 IPR007504 GO:0001522|GO:0042254
Car06g03176 570 MobiDBLite consensus disorder prediction 1 154 - -
Car06g03176 570 MobiDBLite consensus disorder prediction 113 140 - -
Car06g03176 570 SUPERFAMILY Translation proteins 185 248 IPR009000 -
Car06g03176 570 MobiDBLite consensus disorder prediction 489 570 - -
Car06g03176 570 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 38 565 - -
Car06g03176 570 MobiDBLite consensus disorder prediction 80 94 - -
Car06g03176 570 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 38 565 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03176 Car-Chr6 58420810 58424136 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03176 K14763 - gmx:102661630 493.041