Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03118 ATGATGGTTTCAATGGTAAGATCAGATTCACACAACTATACTGATGCATTAACAAAGAGCATTTTGTTTTTTGAAGGCCAAAGATCTGGGAAATTGCCAAACTCTCAACGTATGACATGGAGAAAAGACTCTGCTCTTCATGATGGCTCTGATATTCAAATAAATATGGTTGGTGGATATTATGATGCTGGTGACAATGTAAAATTTCATTTCCCTATGGCATTCACAACAACCATGTTAGCATGGAGTGTGATAGAATTTGGAGATTTCATGGATTCAGATCTTCAACATGCATATGAAGCTATTCGTTGGGGGACTGATTATTTCCTTAACGCCACAAAAGTTCCAAACATGATTGTGGCACAAGTTGGTGATCCTATTAGTGACCATGGTTGTTGGGAAAGGCCAGAAGATATGGATACTTCTAGACAAGCCTATTATATCACCAATGAAAAGCCTGGTTCAGAGGTTTCATCTGAGATTGCAGCTGCACTTGCAGCATCATCCATTGTATTTAGGAATGTTGATTCCAATTATTCCAATAAGATTCTTGATAGGGCTAAACAGGTGTTTGACTTTGCAAATAACTACCGTGGATCCTATAATGATAGCATAGGTGAAGCAGCATGCCCCTTCTACTGTGATTTCAATGGCTACATGGATGAGTTGATTTGGGGTGCAGCGTGGTTGTATAAGGCAACTAATATACAAAGTTATTGGGACTTTGTAAAATCAAATATCCAAAACTTAGAATATCCTGTTGCAAGAAATATTAATGGTTTTAGAGTCCTTTCTAGTGGTGGTAGTTTTGGTGAATTTGGATGGGATTCCAAAAATGCTGGCATTAATGTGCTTGTTTCTCAGTGGGTGATGAATGATTCATCAAGCCAGAGTCCTTTCGTTCCCAATGCAGACAACTTAGTGTGCTCTTTGTTGCCGAATTCACCAACCAAAACTACATCATACTCCAACGGTGGACTTTTATTCAAACCGGGAGTAAGTAATCTACAACATGCAACATCAATGTCTTTTCTGTTAATTGTGTATGCACGATACATGAGAGTTAACCAGAAAACAATATCATGTGGAAATGTAGTTTTTGGTCCAACCAACCTCATAACTCTTGCAAAAAGTCAGGTGGACTATATTCTAGGAGACAATCCACTAGGGATGTCATACATGGTAGGATATGGACCAAAATATCCCCAAAAGATACACCATCGAGGTTCAACATTGCCATCAATAGCCGTGTACCAAAACAAATTGGGATGTAGTGATGGAGCCAAATATTTTGAATCACAAACACCCAATATCAACATACTAACAGGGGCAATTGTTGGAGGACCAGCAGAGGATGATTCTTTTGAGGACTCGCGATATAATGTTCCACAATCAGAGCCAGCTACATATATCAATGCTCCTTTTGTTGGCGTTTTGGCTTACTTCAAACAACTTACTAAATAA 1464 0.3866 MMVSMVRSDSHNYTDALTKSILFFEGQRSGKLPNSQRMTWRKDSALHDGSDIQINMVGGYYDAGDNVKFHFPMAFTTTMLAWSVIEFGDFMDSDLQHAYEAIRWGTDYFLNATKVPNMIVAQVGDPISDHGCWERPEDMDTSRQAYYITNEKPGSEVSSEIAAALAASSIVFRNVDSNYSNKILDRAKQVFDFANNYRGSYNDSIGEAACPFYCDFNGYMDELIWGAAWLYKATNIQSYWDFVKSNIQNLEYPVARNINGFRVLSSGGSFGEFGWDSKNAGINVLVSQWVMNDSSSQSPFVPNADNLVCSLLPNSPTKTTSYSNGGLLFKPGVSNLQHATSMSFLLIVYARYMRVNQKTISCGNVVFGPTNLITLAKSQVDYILGDNPLGMSYMVGYGPKYPQKIHHRGSTLPSIAVYQNKLGCSDGAKYFESQTPNINILTGAIVGGPAEDDSFEDSRYNVPQSEPATYINAPFVGVLAYFKQLTK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03118 487 Pfam Glycosyl hydrolase family 9 13 479 IPR001701 GO:0004553|GO:0005975
Car06g03118 487 Gene3D - 8 487 IPR012341 GO:0005975
Car06g03118 487 SUPERFAMILY Six-hairpin glycosidases 10 483 IPR008928 GO:0005975
Car06g03118 487 PANTHER ENDO-1,4-BETA-GLUCANASE 3 485 - -
Car06g03118 487 Coils Coil 482 487 - -
Car06g03118 487 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 382 408 IPR018221 -
Car06g03118 487 PANTHER ENDOGLUCANASE 3 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03118 Car-Chr6 56525808 56528355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03118 6 482 Glycoside Hydrolase AT1G70710 55.439 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03118 K01179 - gmx:100814370 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03118 06 56525808 56528355 Car06g03118 06 56525808 56528355 ECH