Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03117 ATGTTAGTGATGATGGTTTCAATGGTAAGATCAGATTCACACAACTATACTGATGCATTAACAAAGAGTATTTTATTTTTTGAAGGTCAAAGGTCTGGAAAATTGCCAAGTTCTCAACGTATGAGATGGAGAAAAGACTCTGCTCTTCAGGATGGCAACAATATTCATATGGATACGGTTGGTGGTTATTATGATGCTGGTGACAATGTAAAATTCCATTTCCCTATGGCATTCACAACAACCATGTTAGCATGGAGTGTGATAGAATTTGGAAATCTCATGGGTTCAGATCTTCAACATGCATATCAATCTGTTCGTTGGGGAACTGATTATTTCCTTAAAGCCACAACAAATCCAAACATTATTGTGGCACAGGTTGGTGATCCTATTAGTGACCATGATTGTTGGGAAAGGCCAGAAGACATGGATACTTCTAGAAGAACCTATTATGTCACAAAAAACAGGCCTGGCTCAGAAGTTTCAGCTGAGATTGCGGCTGCACTAGCTGCATCATCCATTGTATTTAGGAGAACTCATCCTCATTATTCTAATTTGCTTCTTGATAGGGCTAAACAGGTGTTTGACTTTGCAAATAATTATCGTGGATCCTATAATGATAGCATAGGTGAAGCAGCATGCCCCTTCTACTGTGATTTCAATGGCTACATGGATGAATTGATTTGGGGTGCAGCGTGGTTGTATAAGGCATCACAAATACAAAGTTATTGGGACTTTGTACAATCAAATATCCAAACCTTAGAGTCTCCTGTTATAAGAAATATTAATGGTTTTAATGCTATTGCTAATTATGGTGGTAGTTTTGGTGAATTTGGATGGGATGCCAAACATGCTGGCATTAATGTGCTTGTTTCTCAGTGGGAGATGAAAAATCCATACCAGAATCCTTTTGTTGCCAATGCAGACAACTTAGTATGCTCTTTGTTGCCGGATTCACCAACCAAATCAGTCACATACTCCCAAGGCAGGACACACTTTTTGACATACCTAATAATTTTAGGTGGGCTTCTATTCAAACCTGGAGCAACTAACCTCCAGCATGGAACAGCAATGTCTTTTCTGTTAATTGTCTATGCACAATACATGAAAGCAAATCAAAAATCAGTATACTGTGGGAATGTATTTGCTGATCCTTCCAAGCTCATAAATCTTGCAAAAAGTCAGGTGGACTATATCCTAGGAAACAATCCACTTGGGATGTCATACATGGTAGGATATGGACAAAAGTATCCTCAAAAGATACACCATCGTGGTTCAACATTGCCATCAATAAGGACACACCCACAGAAAATTGGGTGTCGTGATGGAGACAAATATTTTCAAACATCAGCACCAAATATCAACATACTAACAGGGGCAATTGTTGGAGGGCCAGCAGAGGATGATTCTTTTGAAGACTCACGATATAATGTTCCACAATCAGAACCAGCTACGTATATTAATGCTCCTTTTGTTGGTGTTTTGGCTTATATCAAACACTATATGTAG 1506 0.3871 MLVMMVSMVRSDSHNYTDALTKSILFFEGQRSGKLPSSQRMRWRKDSALQDGNNIHMDTVGGYYDAGDNVKFHFPMAFTTTMLAWSVIEFGNLMGSDLQHAYQSVRWGTDYFLKATTNPNIIVAQVGDPISDHDCWERPEDMDTSRRTYYVTKNRPGSEVSAEIAAALAASSIVFRRTHPHYSNLLLDRAKQVFDFANNYRGSYNDSIGEAACPFYCDFNGYMDELIWGAAWLYKASQIQSYWDFVQSNIQTLESPVIRNINGFNAIANYGGSFGEFGWDAKHAGINVLVSQWEMKNPYQNPFVANADNLVCSLLPDSPTKSVTYSQGRTHFLTYLIILGGLLFKPGATNLQHGTAMSFLLIVYAQYMKANQKSVYCGNVFADPSKLINLAKSQVDYILGNNPLGMSYMVGYGQKYPQKIHHRGSTLPSIRTHPQKIGCRDGDKYFQTSAPNINILTGAIVGGPAEDDSFEDSRYNVPQSEPATYINAPFVGVLAYIKHYM 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03117 501 PANTHER ENDO-1,4-BETA-GLUCANASE 2 500 - -
Car06g03117 501 Pfam Glycosyl hydrolase family 9 16 494 IPR001701 GO:0004553|GO:0005975
Car06g03117 501 SUPERFAMILY Six-hairpin glycosidases 13 499 IPR008928 GO:0005975
Car06g03117 501 PANTHER ENDOGLUCANASE 2 500 - -
Car06g03117 501 Gene3D - 11 501 IPR012341 GO:0005975
Car06g03117 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 397 423 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03117 Car-Chr6 56423469 56431109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03117 2 497 Glycoside Hydrolase AT1G70710 54.819 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03117 K01179 - gmx:100814370 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03117 06 56423469 56431109 Car06g03117 06 56423469 56431109 ECH