Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03032 ATGGATGGTTATGAAGCTACTAGGATTGTATTTTCAAGGATCCAAAACATGGACCCTGAAAATGCTTCAAAAATCATGGGTGTACTTTTGATTCAAGACCATGGTGAAAAAGAAATGATTAGATTAGCATTTGGTCCTGAATCACTTGTTCATTCAGTGATTTTCAAAGCTAGAAAAGAGTTAGGATTAATATTACCACAACCTTCTAATAATAACTCTCCAACAACACCTTCTTCAACTCCTCCATCTCCATCACCTTTCCTTTCAAGacaaaactcaacaacaacaacaacTTCTTCAAGGCTTAGTAATGGTTTCAACCTTCCTCCTTCTTTAACCATTCCTAACCCTTCATCTTCTTGGGCTACTATGTCTGAGTTTCAAAACCATGATGACCCTTTTTACTCAAATGGAGTCTCAGATCCAATTGATGATTTTCAACTACAAGACCAGCTTTCTTTCTTGAATGATAGTTCTGAACTTTTTTACACTCATTCAGATATGTCTTCAAGTCCAACACCTTGTGGTGACTCTACTCTCTTTTCTCCTTCTTATGGCTATGGAGGGTCTCTTCATAGAAGGAGTTGTTCTGTTAATGATGCTTGTTTAGCTTCTGAGGACCCTAATTCTGGGTTGGGTTGGAAACCTTGTCTTTATTTTGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTCCTTCATGGAGGAGAAGCTGATGCAGGTTCAATTGTTGGGTCTCCTAACAAGATTGAGATTATGGACAGCTCAGCTGCAGCACTCATGATGAGTGAGGACTTGCACAAATTTGGAAGATCAAGGCTTGAAAGAAATGATTTTTCTTTGAATAGTCCTACTGGAATGATTAACCCTGCTTCAAGACAGATTTACTTGACTTTTCCAGCTGATAGTACTTTTAGAGAGGAAGATGTTTCCAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATATCAGCAGAAGCGTATGTTTGGCTTTGTTACTTTTGTTTATCCAGAGACAGTGAAGTTGATTTTATCAAAAGGAAACCCTCATTTTGTATGTGATGCTCGAGTACTTGTTAAGCCTTACAAGGAGAAGGGAAAAATTCCAGACAAGAAGCAGATGCAACAGCAGGTAGATAGAGACTTTTCACCTTGTGGCACTCCTACTGGACTTGATGCTAGAGACCAATATGATCTTCAACTTGGTGGAAGAATGTTCTACAATACTCAAGACATGTTGTGGAGAAGGAAGCTAGAGGAACAAGCTGATCTACAACAAGCTCTTGAACTTCAAAGTAGGAGGTTAATGAGTTTGCAACTTCTTGACATCAAGAAACAGCAACACCAACGCGCACTTTCCGCCGGAAGTCCAATTCCTTCTCCGACTCACTCTCCTAACATGTTCAATCAAAATCTTGTTCTTCCTTCTTTTCACAGAAACTCAGAGACCTCAGAAGAGAATGGTTCTAGTACTGCCTCAATTTCTGTTAGTCAACAGTCAGTCAACGTTTCTGCTGGTAAGGAAATTGTGGTCAATGGTGAAAATGGATATAGTGAAGGAAATGGCAAGCAAAACTCAAGTCATGATGAAGAGATTGATTTACAAGAATGTTTGGAGCATAATCTTCCTGATAGCCCTTTTGCTTCCCCTACAAAAGCTGCTGGAGACTTAATGGCTCCCTTCTCTAATGGACCTTATGAGGCCATTGATTCAGATGCATCTGCTAACTCTAAATTTAGCACTAGTTCTCCTCTGGCCATGGAACTATTGGGATGTTTGCCGGCACCGGTGGACCGATTGGCATATAGTTTTCCTCAGGTTCAGGAAAAAAAAAAAAGAAGTAAAGATGATGAAAGAAAACCTTGA 1881 0.3913 MDGYEATRIVFSRIQNMDPENASKIMGVLLIQDHGEKEMIRLAFGPESLVHSVIFKARKELGLILPQPSNNNSPTTPSSTPPSPSPFLSRQNSTTTTTSSRLSNGFNLPPSLTIPNPSSSWATMSEFQNHDDPFYSNGVSDPIDDFQLQDQLSFLNDSSELFYTHSDMSSSPTPCGDSTLFSPSYGYGGSLHRRSCSVNDACLASEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGEADAGSIVGSPNKIEIMDSSAAALMMSEDLHKFGRSRLERNDFSLNSPTGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKQMQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMSLQLLDIKKQQHQRALSAGSPIPSPTHSPNMFNQNLVLPSFHRNSETSEENGSSTASISVSQQSVNVSAGKEIVVNGENGYSEGNGKQNSSHDEEIDLQECLEHNLPDSPFASPTKAAGDLMAPFSNGPYEAIDSDASANSKFSTSSPLAMELLGCLPAPVDRLAYSFPQVQEKKKRSKDDERKP 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03032 626 Gene3D - 204 258 - -
Car06g03032 626 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 590 - -
Car06g03032 626 MobiDBLite consensus disorder prediction 65 111 - -
Car06g03032 626 Gene3D - 293 388 IPR012677 -
Car06g03032 626 MobiDBLite consensus disorder prediction 373 394 - -
Car06g03032 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 370 IPR000504 GO:0003723
Car06g03032 626 ProSiteProfiles Zinc finger C3H1-type profile. 211 238 IPR000571 GO:0046872
Car06g03032 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 351 IPR000504 GO:0003723
Car06g03032 626 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 590 - -
Car06g03032 626 SUPERFAMILY RNA-binding domain, RBD 305 378 IPR035979 GO:0003676
Car06g03032 626 CDD RRM_AtC3H46_like 296 365 IPR034365 -
Car06g03032 626 SMART c3hfinal6 213 237 IPR000571 GO:0046872
Car06g03032 626 MobiDBLite consensus disorder prediction 456 475 - -
Car06g03032 626 SUPERFAMILY CCCH zinc finger 214 236 IPR036855 GO:0046872
Car06g03032 626 MobiDBLite consensus disorder prediction 85 111 - -
Car06g03032 626 SMART rrm1_1 295 365 IPR000504 GO:0003723
Car06g03032 626 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 236 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03032 Car-Chr6 52400702 52404513 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03032 - - adu:107477482 860.907