Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03027 atgaaacaCCACCCAATTAGCCTATTTGGACAACACAACATTTTTTTTCTCAAATTCTTCATTATCTTGTTCCTTAGTTGTATAGCCACAAGATTCAACTTTTGTCTTTCCAACATCCCTTCATCACTAAAAACACTTCCACTTGTAGGACATTTGAGTTTTGATGAACTTAGCCTTACCAAAGCATCAAGAGATTTTGGCAATAGGTACCAATATCATCCAATGGCAATTTTGTATCCAAATTCAGTTTCTGACATTGCAAACACAATAAAACATATATGGAACATGGGACATAGCTCTCATCTTACTGTTGCAGCAAGAGGACATGGACATTCACTTTCAGGACAAGCACAAACTCATGGAGGAATTGTGATTAACATGGAATCACTTAAGGTTTATGAAATGAATGTAGATGTTATAGGGAATGATTCTCCTTATATTGATGTCTCAGGTGGTGAGTTGTGGATAAATATCTTGCATGAGAGTTTAAGATATGGGTTGACACCTAGATCATGGACAGATTATTTGCATTTAACAGTTGGTGGTACTCTTTCAAATGCTGGTGTAAGTGGACAAGCTTTTAAGCATGGTCCTCAGATAAGTAATGTTCAGCAACTAGAGATTGTTACAGGAACAGGGGAAGTGGTAAACTGTTCTAAGGATCAGAATGGAGAACTCTTTCACAGTGTTCTTGGAGGACTTGGTCAATTTGGCATTATAACAAGGGCAAGAATTCTCCTTGAACCAGCCCCTTCAATGGTAAAATGGATTAGAGTGCTATATTCAGATTTCACAGCATTTACTAATGATCAAGAGAGATTAATATCTGAAGAAAATGCATTTGATTACATTGAAGGATTTGTAATAATAAACAGAACTGGTCTACTAAATAACTGGAGATCATCTTTCAACCCACAAGACCCTCTTCAAGCAACTCATTTTAAATCAGATGGAAAAACTCTCTTCTGCCTTGAATTGGCCAAATACTTCAATTTCCAAGAAATGGATATAGTAAATCAGGAAGTTGAGAGACATTTGTCACATTTAAACTATATCCAATCAACCCTTTTTCAAACAGAAGTTACATATGTAGAGTTCTTAGACAGAGTGCATGTATCTGAGATCAAATTGCGTTCAAAAGGTTTGTGGGATGTTCCACATCCATGGCTCAATCTATTTATACCAAAAAGCAAAATACACAGTTTTGCACAACTCGTCTTTGGGAATATTCTAACACAAACAAGCAATGGCCCTGTCCTTATCTACCCAGTAAATAAATCAAAGTGGGACAATAGAACATCTGTTGTTATTCCAGATGAAGATATTTTCTACTTAGTGGCATTTCTTTCCTCTGCAGATACTTCTTCCAATGGAAGCGATAGCTTAGAACATATATTAAGTCAAAACAAAAGAATTTTAGAGGTTTGTGAAAGAGCTAATCTTGGAGTGAAGCAATATTTGCCTCAATACAATACACAAGACGAATGGAGGGCCCATTTTGGTACACATTGGGAGGGTTTTAGACAAAGAAAATTTGTTTATGACCCATTTGCAATACTTGCTCCTGGCCAAAGAATATTTCAAAAAACAATAATCTCTACATGA 1605 0.3583 MKHHPISLFGQHNIFFLKFFIILFLSCIATRFNFCLSNIPSSLKTLPLVGHLSFDELSLTKASRDFGNRYQYHPMAILYPNSVSDIANTIKHIWNMGHSSHLTVAARGHGHSLSGQAQTHGGIVINMESLKVYEMNVDVIGNDSPYIDVSGGELWINILHESLRYGLTPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLEIVTGTGEVVNCSKDQNGELFHSVLGGLGQFGIITRARILLEPAPSMVKWIRVLYSDFTAFTNDQERLISEENAFDYIEGFVIINRTGLLNNWRSSFNPQDPLQATHFKSDGKTLFCLELAKYFNFQEMDIVNQEVERHLSHLNYIQSTLFQTEVTYVEFLDRVHVSEIKLRSKGLWDVPHPWLNLFIPKSKIHSFAQLVFGNILTQTSNGPVLIYPVNKSKWDNRTSVVIPDEDIFYLVAFLSSADTSSNGSDSLEHILSQNKRILEVCERANLGVKQYLPQYNTQDEWRAHFGTHWEGFRQRKFVYDPFAILAPGQRIFQKTIIST 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03027 534 PANTHER GULONOLACTONE OXIDASE 10 531 - -
Car06g03027 534 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 250 IPR016166 GO:0071949
Car06g03027 534 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 10 531 - -
Car06g03027 534 Gene3D - 127 252 IPR016169 -
Car06g03027 534 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 251 527 IPR015345 GO:0009690|GO:0019139|GO:0050660
Car06g03027 534 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Car06g03027 534 SUPERFAMILY FAD-linked oxidases, C-terminal domain 251 527 IPR016164 GO:0003824|GO:0050660
Car06g03027 534 Gene3D - 60 527 IPR016167 -
Car06g03027 534 Gene3D - 253 486 IPR016170 -
Car06g03027 534 SUPERFAMILY FAD-binding/transporter-associated domain-like 51 249 IPR036318 GO:0050660
Car06g03027 534 Pfam FAD binding domain 75 219 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03027 Car-Chr6 52255751 52258900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03027 K00279 - gmx:100808619 897.116