Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03017 ATGGCTGTTGAGGCTTCTGATAAACCAAACGTGCCCAAAAAATTTGATGATGAAGATGGACCAATAACTTTCAAAAGATACTCTAGCAAGAAGAGTCCTTTGCATTCAGAAGTAAAGAAGAGTCCTTCTCAAAGTCACGCGGGACAGTCAAATAAACAGAATGCCAACGTGCCTTCTTCAAATGGCCAAACTTCTGGCTTACAGAAAGGTAATATTGACTCATCTTCTAAGGAATCACCCATGAAGCCTTCTGCAGGTATCTCAAAATCATCAAATTCGGCTGTCAACACCTTTAATAAGTCACCTATAGCAAATTCAAAACCTTCATTAGGGGATAGACCAAGGCCTCTTCTGGGACAGAAAATATCCATTGATGCTGAGAAAGAAACAAAGTCTGTTGAACAATCTACTAAAGGTTATTGTGATGATTTGGAGGATGATGATGATAATAAACCATTGAGTTCTAGGTGGAATATAAACTCTAACCATGATAATAAAGTAGCCCCTGTTTTTATCAGGAAATCTTCTGAAGACTCAGACTCAGACGATGATGATGTCCCTCTATCAGCAAAGTTTTTACAGAATTCTAAATCGGGAACATCTAGCAAGAATTATGATGACACTAATAAGAGGCCTATTTCAAAAAAGTCCAAGGTCTCTGATTCAGCTGCTTCAATCAAAACTAAGCAAGTCTCTGCGAAGAATCAGATTAAGGTTGGCgaggaagatgatgatgatgatgaACTTCCCATTTCCCATAGATTGAAGAAATCACCCACATTAGCTGATAGACCATCTTCCACAAAGAAGATATCGACGAAGGTTACTAAAGTTAATAAGTCTGGTTCAACATCTTTTAAGAAACAAGCCAATAACAAACAGACCAAGAACAAGTCAAAAAGATCCGGCAGTGGCTCAGAATATTCCAAATCTACGAAACTTCTTCCTAGCTCTGGAGATGGGCAGAAAAAATGGACTACGCTGGTTCACAATGGTGTCATATTCCCTCCTCCTTACCAGCCCCATGGGATAAAGATGCTTTATAAGGGGAGGCCTGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCGGTAATGCGAGATACAGATTACATGCAGAAAGATATGTTCAAGGAAAATTTCTGGAATGACTGGCGTAAGTTGCTAGGAAGAAATCATGTAATTCAGAACTTGAAAGATTGTGACTTTACCCCAATTTATGACTGGTGCCAAAGTGAAAAGGAAAAGAAGAAACAAATGACTACCGAAGAAAAGAAAGTTCTGAAGGAAGAAAAATTGAAACAAGAGGAGAAATATATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGAAATTTCAGAGTTGAACCTCCTGGATTGTTCCGTGGCCGCGGAGAGCATCCCAAGATGGGAAGATTGAAAAAACGTATTCATCCAAGCGACATAATAATTAATATTGGAAACGATGCACCAATCCCTGAATGTCCTATTCCTGGTGAACGCTGGAAGGATATAAGACATGACAATACAGTTACATGGCTATGCTATTGGAATGACCCAATTAATCCAAAGCTATTCAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAGGCTAGGATGTTGAAGGATTATATAGCGAACATCAGAGCGGCATACACAAGAGATTTTACTAGCAAGGATATTGCAAAGCAGCAGATAGCTGTTGCTACTTATCTCATTGATAAACTGGCTCTGAGGGCTGGTAATGAGAAGgatgatgatgaagctgatactgttggctgctgcACATTAAAAGTAGAGAATGTGACAAGAGAAGCCCCCAACAAATTGAAGTTTAACTTCCTCGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGAAAAAGGCCCTGGTGATGATCTCTTTGACAAGCTGGATACAAGTAAATTAAATGCTCATCTAAAGGAACTCATGCCTGGTTTAACAGCAAAAGTCTTCCGTACGTTCAATGCATCTATCACATTGGATGATAAGTTGAATAAGGACACTAAAGATGGAGATGTTGCGGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGGAGTGTTTCAAAATCTCACAGTGCACAAATGACAAAATTAAATGAGAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAATAGATTTGGACAGGGCAAGGAAAGGAAAGCCCCCTTCAAAGAGTTCAGATGGAAAAAGCAAAAGGAACTTATCTCCCGAAGCGCTAGAGAAAAAGATATCTCAAACAAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTTAAAACTGTAGCGTTAGGCACATCCAAGATAAACTACCTTGACCCCAGGATTACAGTTGCCTGGTGCAAGAGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCAAAGTTTGCTTGGGCAATGGATGTGGACCCTGACTGGAGATTCTGA 2604 0.3821 MAVEASDKPNVPKKFDDEDGPITFKRYSSKKSPLHSEVKKSPSQSHAGQSNKQNANVPSSNGQTSGLQKGNIDSSSKESPMKPSAGISKSSNSAVNTFNKSPIANSKPSLGDRPRPLLGQKISIDAEKETKSVEQSTKGYCDDLEDDDDNKPLSSRWNINSNHDNKVAPVFIRKSSEDSDSDDDDVPLSAKFLQNSKSGTSSKNYDDTNKRPISKKSKVSDSAASIKTKQVSAKNQIKVGEEDDDDDELPISHRLKKSPTLADRPSSTKKISTKVTKVNKSGSTSFKKQANNKQTKNKSKRSGSGSEYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYQPHGIKMLYKGRPVDLTPEQEEVATMYAVMRDTDYMQKDMFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWCQSEKEKKKQMTTEEKKVLKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGRLKKRIHPSDIIINIGNDAPIPECPIPGERWKDIRHDNTVTWLCYWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIANIRAAYTRDFTSKDIAKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKEKGPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDKLNKDTKDGDVAEKIVVYQHANKQVAIICNHQRSVSKSHSAQMTKLNEKIDELQAVLKELKIDLDRARKGKPPSKSSDGKSKRNLSPEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDWRF 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03017 867 Coils Coil 414 441 - -
Car06g03017 867 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 813 831 IPR018521 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 Gene3D Topoisomerase I; Chain A, domain 3 538 686 IPR014711 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 PRINTS Eukaryotic DNA topoisomerase I signature 625 641 IPR001631 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 PRINTS Eukaryotic DNA topoisomerase I signature 580 599 IPR001631 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 PRINTS Eukaryotic DNA topoisomerase I signature 683 697 IPR001631 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 PRINTS Eukaryotic DNA topoisomerase I signature 603 617 IPR001631 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 PRINTS Eukaryotic DNA topoisomerase I signature 820 831 IPR001631 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 PRINTS Eukaryotic DNA topoisomerase I signature 464 473 IPR001631 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 MobiDBLite consensus disorder prediction 191 207 - -
Car06g03017 867 PANTHER DNA TOPOISOMERASE I 128 867 - -
Car06g03017 867 Pfam Eukaryotic DNA topoisomerase I, catalytic core 538 761 IPR013500 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 Coils Coil 794 814 - -
Car06g03017 867 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 324 535 IPR008336 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 Coils Coil 736 770 - -
Car06g03017 867 Gene3D - 340 423 IPR013034 GO:0003917|GO:0006265
Car06g03017 867 MobiDBLite consensus disorder prediction 1 322 - -
Car06g03017 867 MobiDBLite consensus disorder prediction 766 798 - -
Car06g03017 867 CDD Topo_IB_C 544 737 IPR013500 GO:0003677|GO:0003917|GO:0006265
Car06g03017 867 Pfam C-terminal topoisomerase domain 799 867 IPR025834 -
Car06g03017 867 MobiDBLite consensus disorder prediction 122 140 - -
Car06g03017 867 SMART topeu 464 840 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Car06g03017 867 CDD Topoisomer_IB_N 324 536 - -
Car06g03017 867 Gene3D - 687 867 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Car06g03017 867 Gene3D DNA Topoisomerase I, domain 2 320 535 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Car06g03017 867 MobiDBLite consensus disorder prediction 261 322 - -
Car06g03017 867 SUPERFAMILY DNA breaking-rejoining enzymes 538 865 IPR011010 GO:0003677
Car06g03017 867 MobiDBLite consensus disorder prediction 38 106 - -
Car06g03017 867 PANTHER DNA TOPOISOMERASE I 128 867 - -
Car06g03017 867 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 322 537 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Car06g03017 867 MobiDBLite consensus disorder prediction 218 235 - -
Car06g03017 867 MobiDBLite consensus disorder prediction 9 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03017 Car-Chr6 51806773 51814429 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03017 K03163 - gmx:100799837 1286.17