Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03001 ATGAATACCCTTGTTTCAAAATCCAAACTTTCAACTCCATCTTCAAGTTCTAGAAGCAGTAATAGTAGCTGTAGCAGCAATGAAAGCAATGAAAGTTACTTAATGGAGCTTCAACGTGTCAACAACTATGATCCACCACCACAACAATGCATATCAATTACTTCTCATCGATCTTTGGCGATTCTTTCAGGCCATGTTGGCTCTGTTTCATGTTTAGCTTTATGTGGTGAGTTCATATTGAGTGCTTCACAAGGTAAAGACATCATAGTATGGCAACAACCAGATTTAAGGTTGTTTGCGAAATTCGGACAAGGCGATGGATCTGTGAAAGCACTCGCAACGGTCGGCAACAAAGTCTTCACAGCTCATCAAGATAGCCGGATTCGTGTTTGGAAGGTTTCGAGGAGCTCGGAAAATGTTTTCAAGCTCGTCGACACACTTCCGACGAAAAAGGACTATTTGGGTAAGTTTATGAAGCAGAGTAATTATGTTGTTACTAGGAGACATCATAAGAGGTTGTGGATTGAACATTCTGATAGCATTTCTTGTTTGGTTGTTCATAATGGATTGGTTTATTCAGGTTCATGGGATAAGACACTTAAAGTTTGGAATGTTTGTGATTTGAAGTGTTTAGAGTCAATTAAGGCTCATGATGATGCAATTAATGGGTTGGTAGCATGTAAAGGGATTGTTTATTCAGCTTCTGCAGATGGAAAAATTAAAGCTTGGGGGAAGGGAAAAGAAGGGTTGCATTGTTTGAAAGGAGTTTTGGAGGGTCATAAAGATGTTTCAATTAATTCAGTGGTTGTTTCTGATGATGGGAATTGGGTTTATGGTGGAAGTTCTGATGGTTATGTTATGGGTTATGAAAAGAGTTTTGAGAATTGGAAAGTGGTTTGTGAGAAAAAAGCACATGAAATGGCTGTTTTGTGTATGTGTTTGATAGGGGAGTTTTTGTTTACAGGTTCAGCTGATAAAAGTATAGGGATTTGGAAAAGAGAGGTTTTTGGTAAGATTTGTAAAGTTGGGGTTATAAATGGACATGAAGGGCCTGTGAAGTGTTTGCAAGGTTCATCATCTAATAGAATTGGTGGTGGATTTTTGTTGTATAGTGGTAGTCTTGATAAAAGTGTGAGAGTTTGGTGGGTTCCTAGGTATGATGAGAAAACACAGGTGGAGGAATCAATTAATCAACATCATCATCCTATGTTAGCAAAATGTTGA 1224 0.3824 MNTLVSKSKLSTPSSSSRSSNSSCSSNESNESYLMELQRVNNYDPPPQQCISITSHRSLAILSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTKKDYLGKFMKQSNYVVTRRHHKRLWIEHSDSISCLVVHNGLVYSGSWDKTLKVWNVCDLKCLESIKAHDDAINGLVACKGIVYSASADGKIKAWGKGKEGLHCLKGVLEGHKDVSINSVVVSDDGNWVYGGSSDGYVMGYEKSFENWKVVCEKKAHEMAVLCMCLIGEFLFTGSADKSIGIWKREVFGKICKVGVINGHEGPVKCLQGSSSNRIGGGFLLYSGSLDKSVRVWWVPRYDEKTQVEESINQHHHPMLAKC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03001 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 213 IPR001680 GO:0005515
Car06g03001 407 CDD WD40 58 381 - -
Car06g03001 407 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 397 IPR045182 -
Car06g03001 407 Pfam WD domain, G-beta repeat 342 381 IPR001680 GO:0005515
Car06g03001 407 Pfam WD domain, G-beta repeat 176 204 IPR001680 GO:0005515
Car06g03001 407 Pfam WD domain, G-beta repeat 255 287 IPR001680 GO:0005515
Car06g03001 407 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Car06g03001 407 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Car06g03001 407 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Car06g03001 407 SUPERFAMILY WD40 repeat-like 57 393 IPR036322 GO:0005515
Car06g03001 407 PANTHER OS01G0946100 PROTEIN 4 397 - -
Car06g03001 407 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Car06g03001 407 MobiDBLite consensus disorder prediction 1 28 - -
Car06g03001 407 Gene3D - 43 161 IPR015943 GO:0005515
Car06g03001 407 Gene3D - 162 406 IPR015943 GO:0005515
Car06g03001 407 SMART WD40_4 95 132 IPR001680 GO:0005515
Car06g03001 407 SMART WD40_4 167 204 IPR001680 GO:0005515
Car06g03001 407 SMART WD40_4 250 290 IPR001680 GO:0005515
Car06g03001 407 SMART WD40_4 55 92 IPR001680 GO:0005515
Car06g03001 407 SMART WD40_4 295 332 IPR001680 GO:0005515
Car06g03001 407 SMART WD40_4 338 382 IPR001680 GO:0005515
Car06g03001 407 SMART WD40_4 207 244 IPR001680 GO:0005515
Car06g03001 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 381 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03001 Car-Chr6 51355922 51357637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03001 166 387 Miscellaneous Gene Families AT5G08390 22.807 1.89e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03001 - - gmx:100775295 585.874