Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03000 ATGAGTGATTCTAAGGTGCTACTATTTGGCTCATTTACTGAAGATGAAACAAAATCATTGCGGGTGAAGAAGTCATCTGGGAAAAACGAAAAGCCCGTGCAGAAGAATCAGCTGCAGTTTGGTTCTCTTAATTCTGTTACTGTCGAGTCAAGCAACCTGCCAAAATCACCAAAAGCACCAGATAGTGCTCCTCTCCCTGATTCTCGGAAACTTAATGGAGAAAACGGTGTCAGTGCTAATTTACCTGAAGAATCAGCAATTCTAAAACAGAATGGCAGCATTGCTAACTTTTTGCCTAGTCCCGCAAGTATCACTAGTGCAAACCAAGTTAAAGAAAATAGTGTGTGTTCCGTTACATCAATTAATGAAAATGGTACTGAGAACCAGTTTACAAATTTGAGCCTGGACGCGTCTGAGGCTGAAAGTTTGAAGAGCGAGTTCAAAATTGGCAGTGGTGATGATTCTTCATCGAAGTTGTTTAACAAAGACTTAAGAAAGGCACCTAATGGGCATGCTGTTACGCATGTTAAGGATCTGCAGCCTCGAGGCCTTATTAACTCTGGGAATTTATGCTTTCTTAATGCAACCATGCAAGCTCTCTTGGCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTAAGAACTCGCAACATTCCTAAGGTTGGCTATCCCACGCTGAAAGCATTTGCTGAGTTCATAACTCAATTCGACATGCCAAGCGGAATAAAATTGAAGACGAAAGATACCGATTCTTTTGAGTTTGGACGTGCATTTTGCCCTGTTATCTTTGAAGATGTTCTGAAAAATTTTACTCCAGATGTGCCAAATGGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCACGATGAATTACTGAAGCTTGAAGGACAGTCTTCAAGTCTTAATGGTAGCAAATCTTCTCTAATTTCTTCTGTGGAGGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCAGTTACAAGGACTCAAAGCTTTGTTCCCTCAGAGTTAAGTGGTATTTTCGGAGGACAACTCAGAAGTCTGGTGAAAGCTAAAGGAAATAAAGGTTCTGCAACTGTTCAACCATATCGTTTGCTCCATCTTGACATTTATCCGGATGCTGTTCACACCATTGAGGATGCCCTGCACTTGTTTTCTGCCCCAGAAACTCTTGAAGGGTACCGAGCTTCAGTCAGTGGAAAGGCTGGGCTTGTGACTGCGAGAAAATCTGTAAAGATACAGACACTTCCTAAAGTAATGATATTGCACCTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGTTGCTGAAGCCCGTGCGCTTTCCTCTTGAGTTGGTATTGGGCCGTGACCTGCTTGATTCACCATCTATCGAGGGTCGAAAATATGAACTTGTTGCTACAATTACTCATCATGGAAGGGAGTCTTCAAAAGGACACTACACAGCTGATGCTCAGTACCCCAACGGTCGGTGGCTACGATTCGACGATGCATCTGTCTTTGCTATTGGAGCAAATAAGGTGCTGCATGATCAAGCATATGTTCTTTTCTACAAACAGATATAA 1608 0.4241 MSDSKVLLFGSFTEDETKSLRVKKSSGKNEKPVQKNQLQFGSLNSVTVESSNLPKSPKAPDSAPLPDSRKLNGENGVSANLPEESAILKQNGSIANFLPSPASITSANQVKENSVCSVTSINENGTENQFTNLSLDASEAESLKSEFKIGSGDDSSSKLFNKDLRKAPNGHAVTHVKDLQPRGLINSGNLCFLNATMQALLACSPFVQLLQELRTRNIPKVGYPTLKAFAEFITQFDMPSGIKLKTKDTDSFEFGRAFCPVIFEDVLKNFTPDVPNGISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGSKSSLISSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVKAKGNKGSATVQPYRLLHLDIYPDAVHTIEDALHLFSAPETLEGYRASVSGKAGLVTARKSVKIQTLPKVMILHLMRFGYGSQGSTKLLKPVRFPLELVLGRDLLDSPSIEGRKYELVATITHHGRESSKGHYTADAQYPNGRWLRFDDASVFAIGANKVLHDQAYVLFYKQI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03000 535 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 535 - -
Car06g03000 535 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 535 - -
Car06g03000 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 477 495 IPR018200 GO:0004843|GO:0006511
Car06g03000 535 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 535 IPR028889 -
Car06g03000 535 Pfam Ubiquitin carboxyl-terminal hydrolase 183 532 IPR001394 GO:0004843|GO:0016579
Car06g03000 535 Gene3D Cysteine proteinases 169 534 - -
Car06g03000 535 MobiDBLite consensus disorder prediction 18 78 - -
Car06g03000 535 MobiDBLite consensus disorder prediction 31 57 - -
Car06g03000 535 SUPERFAMILY Cysteine proteinases 178 533 IPR038765 -
Car06g03000 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03000 179 535 Miscellaneous Gene Families AT2G24640 28.804 1.66e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03000 K11841 - gmx:100799656 818.92