Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02973 ATGGCTGAAAATAACGACTCAAACCCTACCCCTCCTCCTCCTCCACATGTCACACTACCGCATGAAGCTGATTCATCCACCGTTACTCCCGAACCTGAACTGAAACCGGAACTCCCGGTCACCGAGAAAATTGAACTACACGATGTACCGTTACAACAACCTGAACCAGAAAACGACCCAAAAGGTAACTCATCACAAGATGTTGCTGTGGTTGAACAACCCAAAGAAGAAGAACAGGAAAACCACAACCAACTCCAACAGAATAAGATTCCACAGAATTCAGTTTCATTCAAAGAAGAAAGCAACAGAGTTAGCGATCTATCTGATTCCGAAAGAGATTCACTCGAAGAATTAAAAAAACTCCTAACACAAACCCTAACCGAACAAGAAGTTTCAATTTGGGGTGTTCCTCTTCTCCAAGACGAAAGAACTGATGTGATTCTCCTCAAATTCCTAAGAGCCAGAGAGTTCAAAGTGAAGGAATCACTCACAATGATCAACAACACACTTCAATGGAGGAAAGATTTCAACATAGAATCACTTTTGGATGAAGATCTAGGTGATGATTTAGACAAAGTTGTTTTCATGCATGGTTATTCAAGAGAAGGTCATCCTGTTTGTTATAATGTTTATGGTGAGTTTCAGAATAAGGAACTTTATGATAAGACTTTTTCTAATGAGGAAAGAAGGAACAGGTTTTTGCGTTGGAGGATTCAGTTCTTGGAGAAGAGTATTAGGAAGCTTGATTTTAATCCTGGTTGTGTTAACACTGTTTTTCAAGTTAATGATCTTAAAAACTCTCCTGGTCCTGCTAAGAGAGAACTGAGAATTGCTACTAAACAAGCTTTGCAGTTGCTTCAGGATAATTATCCTGAGTTTGTTGCTAAACAGGTTTTTATCAATGTGCCGTGGTGGTATCTTGCATTCTATACCATGATCAATCCGTTCTTGACTCAGAGAACAAAGAGTAAATTTGTGTTTGCAGGCCCATCCAAGTCTCCCGATACACTTTTCAAGTATATTTCTCCAGAGCAAGTGCCAGTTCAGTATGGTGGCCTGAGTGTGGATTTCTGTGATTGCAACCCAGACTTCAGCATGTCTGATCCCATCACAGAAATTCCGGTAAAGCCGACCACAAAGCAAACAGTGGAAATTGCTATTTACGAGAAATGCATTATTGTCTGGGAGTTGCGCGTAGTGGGCTGGGAGGTTAGTTACAGTGCTGAATTCAAACCTGATGCTAAAGATGGATATGCGGTTATTATTCAGAAGGCTACAAAGATGTCTCCGAGTGATGAACCAGTGGTTTCCAGTAGCTTCAAAGTTAGTGAACTGGGAAAATTGTTCCTCACTGTTGACAATCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTACTCTGATTGA 1422 0.4065 MAENNDSNPTPPPPPHVTLPHEADSSTVTPEPELKPELPVTEKIELHDVPLQQPEPENDPKGNSSQDVAVVEQPKEEEQENHNQLQQNKIPQNSVSFKEESNRVSDLSDSERDSLEELKKLLTQTLTEQEVSIWGVPLLQDERTDVILLKFLRAREFKVKESLTMINNTLQWRKDFNIESLLDEDLGDDLDKVVFMHGYSREGHPVCYNVYGEFQNKELYDKTFSNEERRNRFLRWRIQFLEKSIRKLDFNPGCVNTVFQVNDLKNSPGPAKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFSMSDPITEIPVKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYSAEFKPDAKDGYAVIIQKATKMSPSDEPVVSSSFKVSELGKLFLTVDNPTLKKKRLLYRFKIKPYSD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02973 473 Gene3D - 63 364 IPR036865 -
Car06g02973 473 CDD SEC14 192 353 IPR001251 -
Car06g02973 473 PANTHER PATELLIN-1 37 473 IPR044834 GO:0008289
Car06g02973 473 SMART sec14_4 188 355 IPR001251 -
Car06g02973 473 ProSiteProfiles GOLD domain profile. 363 468 IPR009038 -
Car06g02973 473 MobiDBLite consensus disorder prediction 1 112 - -
Car06g02973 473 Gene3D GOLD domain 365 469 - -
Car06g02973 473 Pfam CRAL/TRIO, N-terminal domain 115 168 IPR011074 -
Car06g02973 473 SUPERFAMILY CRAL/TRIO N-terminal domain 91 185 IPR036273 -
Car06g02973 473 PANTHER PATELLIN-3 37 473 - -
Car06g02973 473 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 183 352 IPR001251 -
Car06g02973 473 SUPERFAMILY CRAL/TRIO domain 193 361 IPR036865 -
Car06g02973 473 MobiDBLite consensus disorder prediction 84 101 - -
Car06g02973 473 MobiDBLite consensus disorder prediction 36 54 - -
Car06g02973 473 SMART CRAL_TRIO_N_2 144 169 IPR011074 -
Car06g02973 473 Pfam CRAL/TRIO domain 193 352 IPR001251 -
Car06g02973 473 PRINTS Cellular retinaldehyde-binding protein signature 147 169 - -
Car06g02973 473 PRINTS Cellular retinaldehyde-binding protein signature 310 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02973 Car-Chr6 50320785 50323871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02973 148 347 Acyl Lipid Metabolism Gene Families AT1G55840 29.384 3.39e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02973 - - gmx:100804006 640.188