Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02401 ATGCCTCTCAGACTCGAAATTAAGCGAAAGCTTGCACAAAGATCAGAAAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTATACTCCGGGACAGTCTGTATCTGGAACTACCAATCTCAGACCATGGCTAAGTCTTTTGAGGTTACTGAGTTACCTGTTAGGTCGGCCAAGTTTATTGCCCGCAAACAATGGGTTGTTGCAGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAAGCACACACAGATTACATTAGGTGTGTGGCCGTTCATCCCACCCTTCCTTATGTGCTATCATCGTCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTCAATCCTAAAGATACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGTTCTCCTGACCCAAATTTTACACTGGATGCCCATCAAAAAGGAGTGAATTGCGTTGATTATTTTACAGGTGGTGACAAACCTTTTCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTTGAAGGTCACACTCACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATTATAATTACTGGCTCTGAGGATGGTACAGTCCGCATTTGGCATTCAACAACTTATAGGCTTGAGAATACATTGAACTATGGCCTCGAAAGAGTTTGGGCTATTGGATACCTGAAGAGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGAACTATAATGGTCAAACTTGGTCGAGAAGAACCTGTAGCTAGCATGGACAACAGTGGGAAGATCATTTGGGCTAAGCATAATGAGATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGTTACCGTTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTGGTTTGTGGAGATGGTGAGTATATTATATATACTGCCTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGCTTGGTCTACGGATGGAGAGTATGCTGTAAGAGAGAGTACATCAAAGATTAAAATTTTCAGCAAAACTTTCCAGGAAAAGAAGAGTATTCGACCGACTTTTTCAGCAGAACGAATATTTGGTGGGACTGTATTGGCAATGTGCTCAAATGATTTCATATGCTTTTATGATTGGGCTGAATGCAGATTGATTAGGCGCATTGATGTGAATGTTAAAAACCTCTACTGGGCTGATAGCGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTTCATCATATTTAGATAGTGGAAGATCTGTGGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAGTGAACGTGTCAGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGACTTAATTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCACTTGGACCGTCCAATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTTTTTTTGATAGACAAAGAATTCAATGTTGTGGGCTACACACTGCTTTTAAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGGGCTAGTGAAATTCTACCATCAATTCCAAAAGAGCATCATAATAGTGTGGCTCATTTCCTGGAATCCCGAGGCATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGATTCGACCTAGCCATACAGCTTGGAAGATTAGAGGTTGCAAAGGCTATTGCTATAGAAGTACATAGTGAGTCTAAATGGAAGCAATTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAACATGCAATGGATTTGAGTGGATTGTTGCTTCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCGAAACTTGCAACTCTTGCCAAAGAGCAAGGGAAGAACAATGTTGCTTTCCTTTCCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAATTGTTAGTAGAAAGCAATCGGATTCCAGAGGCTGCCTTGATGGCTCGATCATATCTTCCAAGCAAGGTCCCAGAGATAGTGGCGATTTGGAGAAAAGATCTCAGCAAGGTTAATCCAAAAGCAGCTGAATCTTTGGCTGATCCTGAGGAGTATCCTAATCTGTTTGAAGATTGGCAAGTTGCCCTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGGGTGTTTACCATCCTGCAGAGGAGTACGTCAACCATGCTGATAAATCACACATTACCCTTGTTGATGCTTTCAGAAATATGCAGATTGAAGAAGGGGATCAGCCTCTTGAGAATGGGGACTCTAATCATGAGTTGACTGAACAAAATGGAGAAGAGGATTATACAGAAGCGCATGAAGAACAAAACGAAGAAGAGGATTATACTGAGGAGCAAGAAGAACAAAATGGAGAGGAAGGAAGCCAAGAGGATGCAGTTGTAGTTGATGCCGATTCTACAGATGGTACAGTTCTTATTAACGGTAACGAGGCTGATGAAGAGTCGAGTACGATTAAAGGAGAAGGAGGAGCCCCGTCAGAGTAA 2808 0.4145 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPFLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSTDGEYAVRESTSKIKIFSKTFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSYLDSGRSVDEQGVEDAFELLHEMSERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDLERASEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKAIAIEVHSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLSLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVPEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRGVYHPAEEYVNHADKSHITLVDAFRNMQIEEGDQPLENGDSNHELTEQNGEEDYTEAHEEQNEEEDYTEEQEEQNGEEGSQEDAVVVDADSTDGTVLINGNEADEESSTIKGEGGAPSE 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02401 935 PIRSF Beta'-COP 2 899 IPR016453 -
Car06g02401 935 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Car06g02401 935 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Car06g02401 935 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Car06g02401 935 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Car06g02401 935 MobiDBLite consensus disorder prediction 852 868 - -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Car06g02401 935 PANTHER COATOMER 1 875 - -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Car06g02401 935 Gene3D - 590 798 - -
Car06g02401 935 PANTHER COATOMER SUBUNIT BETA' 1 875 - -
Car06g02401 935 CDD WD40 17 297 - -
Car06g02401 935 Gene3D - 11 300 IPR015943 GO:0005515
Car06g02401 935 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Car06g02401 935 SUPERFAMILY NHL repeat 219 492 - -
Car06g02401 935 SMART WD40_4 4 43 IPR001680 GO:0005515
Car06g02401 935 SMART WD40_4 174 215 IPR001680 GO:0005515
Car06g02401 935 SMART WD40_4 88 127 IPR001680 GO:0005515
Car06g02401 935 SMART WD40_4 218 257 IPR001680 GO:0005515
Car06g02401 935 SMART WD40_4 46 85 IPR001680 GO:0005515
Car06g02401 935 SMART WD40_4 131 171 IPR001680 GO:0005515
Car06g02401 935 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Car06g02401 935 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Car06g02401 935 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Car06g02401 935 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Car06g02401 935 MobiDBLite consensus disorder prediction 848 935 - -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Car06g02401 935 Coils Coil 873 893 - -
Car06g02401 935 MobiDBLite consensus disorder prediction 869 895 - -
Car06g02401 935 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02401 Car-Chr6 26407732 26419966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02401 51 309 Miscellaneous Gene Families AT5G08390 24.906 7.70e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02401 K17302 - gmx:100797508 1756.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02401 06 26407732 26419966 Car06g02401 06 26407732 26419966 ECH
Car01g02801 01 53281711 53293963 Car06g02401 06 26407732 26419966 PCT