Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02324 ATGTCATCTCTGAGTAGAGAATTGGTATTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAGGAAGAAGTTCATAATGGAAATTGGGATGAAGTTGAAAAGTACTTATCTGGTTTCACAAAAGTTGATGATAATAGATATTCTATGAAGATATTTTTTGAGATAAGGAAGCAAAAGTATCTTGAGGCATTGGATAAGCATGACCGGTCTAAAGCGGTAGAGATATTAGTGAAGGATTTGAAAGTGTTTTCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAACAGTTGTCTAAGTATGGTGATACAAAGTCTGCGCGAGCAATCATGTTGGTTGAGCTTAAAAAGCTCATTGAAGCAAATCCCTTGTTTCGCGACAAATTGCAATTTCCTAACCTTAAAAACTCGAGGTTAAGGACCCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGTAAGAATCCGCGTCCGAATCCTGATATAAAAACCCTTTTTGTGGATCACTCATGTGGACAACAACCGAATGGTGCACGAGCGCCTTCACCTGCCAACAGTCCGCTATTAGGATCCTTACCGAAGGCTGGAGGATTTCCTCCTCTTGGTGCTCATGGGCCATTTCAACCTACACCGGCGCCAGTGCCAACACCTATTGCTGGTTGGATGCCAAATCCTACAACTATAGCACATGCTGCGGTGTCTGGCGGAGGAGCTATAGGTCTTGGTGCTTTGAAGCATCCTAGGACCCCTCCAACTAATCCTTCAGCCGACTATCCATCGGGAGACTCGGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATAACAGATGAGGTAAATCTACCTGTCAATGTGTTGTCACCAACATTCCAAGGTCATGGACATGGTCATGGTCAGTCGTTTAATGCACCTGATGACTTGCCGTTGCCGAAGACTGTCATGCGAACATTGAATCAAGGCTCATCTCCTATGAGCATGGACTTTCATCCGGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGGGACATTGCCTTATGGGAGGTGGGTTCTAGGGAACGGTTAGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTTCTCTTGTCAAAGAACCGAGTGTTTCTGTTAATCGTGTGATTTGGAGTCCTGACGGTGCTTTATTTGGAGTTGCTTACTCGAGGCACATTGTTCAGATATACTCTTACCATGGTGGTTATGAAGTACGACAACACTTGGAGATTGATGCTCATGTTGGTGGAGTAAACGATCTAGCATTTTCCCACCCAAATAAGCAACTATGTGTGATAACTTGCGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTTCGGGAGCAAAGCAGTATACGTTTGAAGGTCACGAGGCTCCGGTTTATTCTGTCTGTCCACATTATAAAGAAAGCATTCAGTTCATCTTTTCGACAGCGCTAGACGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGCGCACAACCATGGCTTATAGTGCAGACGGTACAAGGCTCTTTTCGTGTGGAACAAGCAAAGATGGGGAATCTTCAATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGAACTTACCAAGGTTTTCGTAAACAATCTTTAGGTGTAGTGCAATTCGATACTACCAAAAATCGGTTTTTGGCTGCCGGCGATGATTTCTCCATTAAATTCTGGGATATGGACAATATTCAACTTTTGACAACAGTTGATGCTGATGGTGGTCTCGCTGCAAGTCCGCGTATTCGTTTCAACAAGGATGGAACTCTTTTAGCAGTCTCATCAAACGATAATGGAATCAAAATTTTAGCCAATGCAGATGGTATTCGTTTATTGCGTACATTAGAGAATTCTATATACGATGCGTCAAGAGCATCGGAAGCCTTGGCAAAGCCAACAATAAATTCAATTTCTTCCGCTTCCGCCGCAACTAGCGCTGCCTTAGCAGAGAGAGCCTCATCTGCAGCAGCTATTGCTGGAATGAACGGGGATGCACGAAACATGGGCGATGTTAAACCGAGAATAAGCGAAGAATCCAATGACAAGTCCAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCATTGTAGATCCTTGAAGCTACCAGAGAATGTTAGAGTAAACAAGATATCGAGGTTGATATATACAAACTCAGGTAATGCTATTCTTGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCCGCGTAACGAGCGTAACTCGTCTGGCAAGGCCAATGCCTCGGTGCAACCTCAGTTGTGGCAACCGTCGAGTGGCATCCTGATGACTAATGACATTGCTGATAGCAATCCGGAAGATTCTGTTCCGTGCTTTGCTCTGTCGAAAAATGATTCGTATGTAATGTCGGCATCAGGAGGAAAGATATCCTTGTTCAATATGATGACTTTTAAGACGATGACAACTTTCATGCCTCCGCCACCTGCGGCTACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCCATTCAGATATACAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATAACTGGTCTTGCTTTCTCCCATGTATTGAATGTTCTTGTTTCATCCGGAGCAGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAGACGAGATTCTTGCAGCTTCCTCCCGGGAGGACTCCGTCAGCACAGTCAGATACGCGCGTACAGTTTCATCAAGATCAAATACAGTTCTTGGTCGTACATGAAACTCAGCTCGCCATTTTCGAAGCAACTAAACTCGAGTGTCTAAAGCAGTGGTTCCCGCGGGATTCTTCTGCACCAATATCGCATGCAACCTTTTCGTGCGACAGCCAACTGATATATGCAAGCTTTTTAGACGCAACGGTCTGTGTATTTAATGCTTCAAATCTCAGATTACGGTGTCGTATCAGTCCTTCTGCTTATCTTCCTTCAAGTGTCAGCAATTCAAATGTACAACCACTAGTAATTGCAGCACATCCACAAGAACCAAATCAGTTTGCCATAGGATTATCCGACGGCGGAGTTCACGTGTTTGAGCCGCTCGAATCCGAAGGCAAATGGGGCGTGCCGCCTCCGGTCGAAAACGGATCAACTAGCAATAATGTAGCAGTAGCTACTTCAGTTGGACTACCTTCAGATCAAGCTCAAAGATGA 3405 0.4335 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPIAGWMPNPTTIAHAAVSGGGAIGLGALKHPRTPPTNPSADYPSGDSDHVAKRTRPMGITDEVNLPVNVLSPTFQGHGHGHGQSFNAPDDLPLPKTVMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQASLVKEPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGYEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKESIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWRTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKQSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLAASPRIRFNKDGTLLAVSSNDNGIKILANADGIRLLRTLENSIYDASRASEALAKPTINSISSASAATSAALAERASSAAAIAGMNGDARNMGDVKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVQPQLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRISPSAYLPSSVSNSNVQPLVIAAHPQEPNQFAIGLSDGGVHVFEPLESEGKWGVPPPVENGSTSNNVAVATSVGLPSDQAQR 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02324 1134 Gene3D - 547 686 IPR015943 GO:0005515
Car06g02324 1134 SMART WD40_4 911 950 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 868 908 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 828 865 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 537 580 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 583 623 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 343 382 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 1056 1096 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 626 667 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 493 534 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 449 490 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 1002 1043 IPR001680 GO:0005515
Car06g02324 1134 SMART WD40_4 403 443 IPR001680 GO:0005515
Car06g02324 1134 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1134 IPR027728 GO:0006355
Car06g02324 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 632 IPR001680 GO:0005515
Car06g02324 1134 SMART Lish 4 36 IPR006594 GO:0005515
Car06g02324 1134 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1134 - -
Car06g02324 1134 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Car06g02324 1134 CDD WD40 357 665 - -
Car06g02324 1134 ProSitePatterns Trp-Asp (WD) repeats signature. 477 491 IPR019775 -
Car06g02324 1134 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 471 955 IPR011047 -
Car06g02324 1134 SUPERFAMILY WD40 repeat-like 345 533 IPR036322 GO:0005515
Car06g02324 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 499 IPR001680 GO:0005515
Car06g02324 1134 SMART ctlh 34 92 IPR006595 -
Car06g02324 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 918 959 IPR001680 GO:0005515
Car06g02324 1134 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Car06g02324 1134 Gene3D - 322 545 IPR015943 GO:0005515
Car06g02324 1134 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 918 950 - -
Car06g02324 1134 Gene3D - 807 1096 IPR015943 GO:0005515
Car06g02324 1134 Pfam WD domain, G-beta repeat 917 950 IPR001680 GO:0005515
Car06g02324 1134 Pfam WD domain, G-beta repeat 456 490 IPR001680 GO:0005515
Car06g02324 1134 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 936 1103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02324 Car-Chr6 24918301 24928274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02324 454 651 Miscellaneous Gene Families AT5G08390 24.138 8.03e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02324 - - gmx:100795759 2063.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02324 06 24918301 24928274 Car06g02324 06 24918301 24928274 ECH