Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02227 ATGGAAGTTAACAACTTCTCTTTCAACCACCGCTCCCTCCGATTAACCTCTCCCCTCTCTCTTTCCTCTCCCCGTACACACTTCCTCGGTTTCAACCATACTCTCAAGCCACCTGCTTCTCCAGCTCCATCAATTCGCTCTCGAAACAAAACCAACAGGTTAAGTCTTCTTCGCCTCCATTCACCGCGTTTCGTCTTCAAGGCTTCTTTTCACTCTCACTCTCTTATAGTCGTTGTCGTCGTTGTTACTTTATCTGCTGTTTCCTTGCTTCACTTCACTCTCAACAAGAGAAAGAAGAATCTCAACCAGGGACATGCAAAATATGCATTATCGCCACAAGGAAGTAATGTTGGGAACCAGGTCATTGACAGCCAGATTCTTGGTTTTCCAAAATTTCAAAGGGATAACTCGCTGAGCGAAATTGGGAAGTTAAATGATATCAACGGAAAGGAAAACCATGTTTTTGAGGACCAAGAGGTCCACCTTCAATTTTTGCAATCTTCTATGGTGCAAGAAACTGCCTTGAAGACTCAGACGATAGATTCATCTTCGTCTGTTCTTGACTCTAGTGTCAATGATAACAGCTCCGAGGTATTAGAGGAGCCTTTTTTATCTGTGACTTTCCAATCAGGTTCATTAGAACCTATAGCTTTTGCTGAGGAAATGACTCTACAAGTGGTAGAAAATCAAGATGTAGTTGACTCTGATCTCGAGTTGCCTTTGAGTATGGTCAAACCTGAGCATGATGCTTCTTCTGTTGATGTAGACAATGCACTTTCTACAATCAATGAACATACTAAAGAAAAAATTGAACTTCGTGCCATCAAAAGTGGTGTCCTTTTTGGCGAATCTGTTAGGGAAGGGCTGTACATGTTTTATGAGGACAAAAATTCTGCCTCCGGATCCATGAAACCCCTGAGTAGTAATGAGTCATTATCTACCGGTGCTTCTTTTGCGAATAGCAAAGGATTTCCATCTGCAATAGGAAATACCAGCGTGAATGGATTAAGATTATCTACAGATATTTCTCAACGAAATGCAGAGTTTGTTGAAGGAGCAGTTAAAATTTCCAGTCACAGAGAAGGCTTCCCTCGACAACATGTAAGTAAAAACTTGAGAAAAGCCGGAAGATATCTGAGAGACAGGGAAAGGAACTATATGGATCATAATAGTAACAAAGTTTTGCCCCAGAGTTCCCACTCAGTCAGGGTGCATGTCGATCAGAAAAAGGATAAAATCAGGGTCCACGATGGTCAGAAAATTGATCCTTCAAAGCATCTAAGCAAATATAGTTACTTGCTAAAAGCTGGCAGGCTACGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTATTAGATATGACTAAGGCTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTATATTAGGCTTATTCCAAATCCAACATTGAGTACGTTTAATATGCTTATGTCGGTGTGTACAAGCTCCCAAGATTCAGAAGGGGCTTTCCAAGTTATGCAGCTTCTTAAGGATGCTCAACAAGATCCTGATTGCAAACTTTATACTACTCTGATATCAACTTGTGCAAAAACTGGGAAAGTTGATCTAATGTTTGAAGTATTTCACACGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTATGGGGCGCTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGCTAAAGCATTTGGTGTATATGGGATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTTTTCAATGCACTTATTGCTGCATGTGCACAGTCAGGAGCAATGGCTCGTGCCTTTGACGTGGTAGCAGAAATGGAAGCTGAAATACAACCTATTGAGCCAGACCACGTAACTTTTGGTACATTGATGAAGGCATGTGCAAAGGCTGGTCAGGTTGAACGAGCACGTGAAGTGTATAAGATGATACAACAATATAATATAAAGGGATCTTCAGAAGTTTACACAATTGCAATTAATTCTTGTAGTCAAACTGGAGATTGGGAATTTGCACGTAGTGTATACGATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTCTTAGTGCACTAATAGATGTTGCTGGGCATGCTCAAAATCTGGAGGCTGCTTTTGATATATTACAACAGGCCCGGAAAGGAGGAATACAGATTGGAATGATGACATATAGCTCATTGATGGGTGCCTGTAGCAAGGCAAGAAATTGGCAGAAAGCATTGGAGCTATACGAACATCTTAAATCTCTTAAATTGGTGCAAACAGTTTCAACTGTTAATGCTTTGCTCACTGCTCTTTGTGATGGGGATCAATTTCAGAAGGCTTTGGAGGTTTTATCTGAAATGAAAGGATTAGGATTGCGCCCAAACAGTATCACATTCTCAATACTTATCGTGGCAAGTGAGAAGAAGGATGATATGGAAGCAGCTCAAATGCTCTTTTCTCAAGCCAAAAAGGATGGTGCACCCCCTACTCTCATCATGTGTAGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAAGCTTGCCTTGTTGGTGAACCTGTTTTATCTTTCGACTCAGGACGGCCACAAGTTAATAATGAATGGACATCACTGGCTTTAACGGTGTATCGTGAAACAATCGGAGCTGGTGAAAAGCCTACAAGTGAACTATTGTCACAAATTCTGGGATGCATGAAATTCCCTTACGATACATATCTGAAAAATAGACTTGTTGAGAACCTGGGAGTGAGTTCTGAAACCTCAAGAAATTCAAACCTCTGTTCATTGATAGATGGATTTGGTGAATATGATCCTCGTGTTTTTTCAATACTTGAGGAAGCTGCTTCATATGGAGTTGTTCCATCTGTGTCATTTAAAGTGAATCCTATTGTTATTGATGCTAAAGAATTGCATGCTTTTACTGCTGAGGTATACCTCTTAACTGTTTTGAAAGGCCTCAAGCATCGACTAGCAGCAGGTGCAAGACTACCCAATTTAATCATTTTATTGCCTGTAGAAGAAACAAAAGTTTCGTCTCCCAATGGGGAAAAGATTATTATACTTGCAGAAAGAGCTGGCCAAGCAGTTGCAGCGTTGTTCAGGAGGCTTCATATTCCCTACCAGGGTAATGAATCGAATGGGAAACTTAGAATAAATAGTCTGGGCTTGATAAAATGGTTTCAGCCAAAGCTTGCATCTCCATTCAGCGGTTTACCAGGTGACTGGAGCTCATCTGAATCACGACTGGGCAAAAATATTAGCCATCAGCAGCGAAACATTCGAACTGGCAATCTATCTTTGGACTAA 3342 0.4081 MEVNNFSFNHRSLRLTSPLSLSSPRTHFLGFNHTLKPPASPAPSIRSRNKTNRLSLLRLHSPRFVFKASFHSHSLIVVVVVVTLSAVSLLHFTLNKRKKNLNQGHAKYALSPQGSNVGNQVIDSQILGFPKFQRDNSLSEIGKLNDINGKENHVFEDQEVHLQFLQSSMVQETALKTQTIDSSSSVLDSSVNDNSSEVLEEPFLSVTFQSGSLEPIAFAEEMTLQVVENQDVVDSDLELPLSMVKPEHDASSVDVDNALSTINEHTKEKIELRAIKSGVLFGESVREGLYMFYEDKNSASGSMKPLSSNESLSTGASFANSKGFPSAIGNTSVNGLRLSTDISQRNAEFVEGAVKISSHREGFPRQHVSKNLRKAGRYLRDRERNYMDHNSNKVLPQSSHSVRVHVDQKKDKIRVHDGQKIDPSKHLSKYSYLLKAGRLRECVELLKDMEMKGLLDMTKAYHAKFFNICKKQKAVKEAFDYIRLIPNPTLSTFNMLMSVCTSSQDSEGAFQVMQLLKDAQQDPDCKLYTTLISTCAKTGKVDLMFEVFHTMVNSGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALIAACAQSGAMARAFDVVAEMEAEIQPIEPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFARSVYDDMTQKGVLPDEMFLSALIDVAGHAQNLEAAFDILQQARKGGIQIGMMTYSSLMGACSKARNWQKALELYEHLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLFSQAKKDGAPPTLIMCRCIIGMCLRRFEKACLVGEPVLSFDSGRPQVNNEWTSLALTVYRETIGAGEKPTSELLSQILGCMKFPYDTYLKNRLVENLGVSSETSRNSNLCSLIDGFGEYDPRVFSILEEAASYGVVPSVSFKVNPIVIDAKELHAFTAEVYLLTVLKGLKHRLAAGARLPNLIILLPVEETKVSSPNGEKIIILAERAGQAVAALFRRLHIPYQGNESNGKLRINSLGLIKWFQPKLASPFSGLPGDWSSSESRLGKNISHQQRNIRTGNLSLD 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
Car06g02227 1113 MobiDBLite consensus disorder prediction 1091 1113 - -
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 806 840 IPR002885 -
Car06g02227 1113 Pfam PPR repeat 434 454 IPR002885 -
Car06g02227 1113 Gene3D Tetratricopeptide repeat domain 744 862 IPR011990 GO:0005515
Car06g02227 1113 Gene3D Tetratricopeptide repeat domain 454 571 IPR011990 GO:0005515
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Car06g02227 1113 Pfam Pentatricopeptide repeat domain 794 852 IPR002885 -
Car06g02227 1113 Pfam Pentacotripeptide-repeat region of PRORP 639 781 IPR033443 -
Car06g02227 1113 Pfam Pentacotripeptide-repeat region of PRORP 491 630 IPR033443 -
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 624 IPR002885 -
Car06g02227 1113 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 68 1113 - -
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 666 700 IPR002885 -
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Car06g02227 1113 TIGRFAM PPR: pentatricopeptide repeat domain 561 594 IPR002885 -
Car06g02227 1113 TIGRFAM PPR: pentatricopeptide repeat domain 633 664 IPR002885 -
Car06g02227 1113 TIGRFAM PPR: pentatricopeptide repeat domain 669 702 IPR002885 -
Car06g02227 1113 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Car06g02227 1113 TIGRFAM PPR: pentatricopeptide repeat domain 739 769 IPR002885 -
Car06g02227 1113 TIGRFAM PPR: pentatricopeptide repeat domain 774 806 IPR002885 -
Car06g02227 1113 Gene3D Tetratricopeptide repeat domain 573 733 IPR011990 GO:0005515
Car06g02227 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02227 528 853 Glycosyltransferase AT1G05670 24.159 4.25e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02227 - - gmx:100814164 1608.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02227 06 22863221 22880107 Car06g02227 06 22863221 22880107 ECH