Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02221 ATGGCGGAAGATTACGAAACTGAGACTGAAACAGAAACCGGAGTTGAACAACAGTTCTCCGTTTGGAAGAGAAACACTCCTCTCTTATACGATCTTGTCATATCTCACCCTCTTCAATGGCCTTCTCTCACCGTTCACTTTCTTCCCTCTCCTCCTCAACCCCACTCTCATCCTTCCCTCAACCTCCACAAGCTTCTCCTCGGCACTCACACTGCTCAAGGCGAACCTAACTACCTCATGCTCGCCGAAGCCTCCATTCCTGCAAATATATCTCAACCCATCATCGCTGATGATCCTGAAGACCCCATTATTCCCAAGGTAGAGATTACTCAAAAGATTCTTGTTAATGGAGAGGTGAATAGGGCGCGTTCTATGCCACAAAACCCTAGTGTTGTTGCTGCGAAGACTTGTAATGCTGAGGTATATGTGTTTGATTTTACAAAGCAGCGTGGGGATGGTTTTGATCCTGATTTCAGGTTGAAGGGTCATGATCAAGAAGGTTATGGTTTGTCTTGGAGCACTTTAAAGAAAGGGCACCTTTTGAGTGGTTCTAATGACCATAAGATTTGCTTCTGGGATGTACATGCTGAATCTCAAAGCAATGTTCTTGACGCTGTTCATGTTTATGAGGGTCATGAAAGTCTTGTTGAAGATGTGTCCTGGCATTTGAAGAATGAGAATTTATTTGGGTCTGGGGGAGATGACTGCAAGCTGATAATTTGGGACTTACGGACAAACAAAGCCCAACATTCACTCCAACCCCATGAAAGGGAGGTGAACTTTGTTTCTTTCAATCCGTATAATGAATGGATTTTGGCTACAGCTTCTTCGGACACCACAGTTGGTCTCTTTGATATACGGAAGCTTGATGTTCCACTACATTTTCTAAGTGGCCATACAGATGAGGTATTCCAGGTAGAGTGGGATCCTCATCACGAGACCGTGTTGGCATCTTCTAGTGGTGACAGAAGGCTGGTGGTTTGGGACCTTAACAAGATTGGGGATGAGCTAATAGAAGGAGATGATGAGGGGGGTCCTCCTGAACTACTCTTCTCTCATGGGGGTCACAAAGGAAAAATATCAGATTTTTCATGGAATCAAAACCAGCCATGGGTAATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTCTGGCATATGTCTGAAAACATTTACAatgatggtgatgatgatgatgatgaCACTTGGATGGGCAGTGACCAGCACTAA 1230 0.4366 MAEDYETETETETGVEQQFSVWKRNTPLLYDLVISHPLQWPSLTVHFLPSPPQPHSHPSLNLHKLLLGTHTAQGEPNYLMLAEASIPANISQPIIADDPEDPIIPKVEITQKILVNGEVNRARSMPQNPSVVAAKTCNAEVYVFDFTKQRGDGFDPDFRLKGHDQEGYGLSWSTLKKGHLLSGSNDHKICFWDVHAESQSNVLDAVHVYEGHESLVEDVSWHLKNENLFGSGGDDCKLIIWDLRTNKAQHSLQPHEREVNFVSFNPYNEWILATASSDTTVGLFDIRKLDVPLHFLSGHTDEVFQVEWDPHHETVLASSSGDRRLVVWDLNKIGDELIEGDDEGGPPELLFSHGGHKGKISDFSWNQNQPWVISSVAEDNSFHVWHMSENIYNDGDDDDDDTWMGSDQH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02221 409 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Car06g02221 409 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Car06g02221 409 Pfam WD domain, G-beta repeat 292 329 IPR001680 GO:0005515
Car06g02221 409 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Car06g02221 409 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Car06g02221 409 SUPERFAMILY WD40 repeat-like 117 388 IPR036322 GO:0005515
Car06g02221 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 287 IPR001680 GO:0005515
Car06g02221 409 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 1 400 - -
Car06g02221 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 247 - -
Car06g02221 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 331 - -
Car06g02221 409 SMART WD40_4 346 386 IPR001680 GO:0005515
Car06g02221 409 SMART WD40_4 202 242 IPR001680 GO:0005515
Car06g02221 409 SMART WD40_4 153 193 IPR001680 GO:0005515
Car06g02221 409 SMART WD40_4 289 329 IPR001680 GO:0005515
Car06g02221 409 SMART WD40_4 245 285 IPR001680 GO:0005515
Car06g02221 409 PANTHER WD40 REPEAT FAMILY 1 400 - -
Car06g02221 409 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 18 87 IPR022052 -
Car06g02221 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 202 IPR001680 GO:0005515
Car06g02221 409 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Car06g02221 409 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Car06g02221 409 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Car06g02221 409 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Car06g02221 409 Gene3D - 1 406 IPR015943 GO:0005515
Car06g02221 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 331 IPR001680 GO:0005515
Car06g02221 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02221 Car-Chr6 22802791 22805474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02221 209 388 Miscellaneous Gene Families AT5G08390 24.444 2.65e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02221 K10752 - gmx:100791834 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02221 06 22802791 22805474 Car06g02221 06 22802791 22805474 ECH