Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g02216 | ATGAGTGGGTCCAGGTTCATTAAGTGTGTTACCGTAGGTGACGGTGCCGTAGGCAAGACTTGTTTGCTTATCTCCTACACCAGCAACACTTTCCCTACGGACTATGTGCCTACTGTCTTTGATAATTTCAGTGCAAATGTAGTTGTGGATGGGAGCACTATAAATCTGGGTTTGTGGGATACTGCTGGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCGGATGTTTTCCTGCTTGCTTTCTCACTCATAAGCAGGGCCAGCTATGAAAATATCGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTCGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAATTCTTTCAAGACCATCCTGGTGCGGTGCCAATCACCACAGCACAGGGTGAGGAACTGAGAAAGCTTATTGGTGCTCCAGTTTACATTGAATGTAGTTCCAAAACACAAAAGAATGTGAAGGCTGTTTTTGATGCGGCCATCAAAGTAGTTCTACAGCCGCCAAAGCAAAAGAAAACTAAGAGAAAGGGGCAAAAAGCCTGTTCCATTTTGTGA | 594 | 0.4394 | MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPPKQKKTKRKGQKACSIL | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g02216 | 197 | CDD | Rop_like | 6 | 178 | - | - | |
| Car06g02216 | 197 | PANTHER | RAC-LIKE GTP-BINDING PROTEIN ARAC3 | 1 | 197 | - | - | |
| Car06g02216 | 197 | SMART | rab_sub_5 | 7 | 180 | - | - | |
| Car06g02216 | 197 | TIGRFAM | small_GTP: small GTP-binding protein domain | 7 | 171 | IPR005225 | GO:0005525 | |
| Car06g02216 | 197 | ProSiteProfiles | small GTPase Rab1 family profile. | 2 | 197 | - | - | |
| Car06g02216 | 197 | PANTHER | RHO FAMILY GTPASE | 1 | 197 | IPR003578 | GO:0005525|GO:0007264 | |
| Car06g02216 | 197 | ProSiteProfiles | small GTPase Rho family profile. | 1 | 177 | - | - | |
| Car06g02216 | 197 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 178 | IPR027417 | - | |
| Car06g02216 | 197 | Gene3D | - | 5 | 192 | IPR027417 | - | |
| Car06g02216 | 197 | SMART | rho_sub_3 | 9 | 180 | IPR001806 | GO:0003924|GO:0005525 | |
| Car06g02216 | 197 | Pfam | Ras family | 8 | 178 | IPR001806 | GO:0003924|GO:0005525 | |
| Car06g02216 | 197 | SMART | ras_sub_4 | 4 | 180 | - | - | |
| Car06g02216 | 197 | PRINTS | Transforming protein P21 ras signature | 7 | 28 | - | - | |
| Car06g02216 | 197 | PRINTS | Transforming protein P21 ras signature | 30 | 46 | - | - | |
| Car06g02216 | 197 | PRINTS | Transforming protein P21 ras signature | 47 | 69 | - | - | |
| Car06g02216 | 197 | PRINTS | Transforming protein P21 ras signature | 109 | 122 | - | - | |
| Car06g02216 | 197 | PRINTS | Transforming protein P21 ras signature | 155 | 177 | - | - | |
| Car06g02216 | 197 | ProSiteProfiles | small GTPase Ras family profile. | 2 | 197 | IPR001806 | GO:0003924|GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car06g02216 | Car-Chr6 | 22774347 | 22777431 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car06g02216 | 7 | 180 | EF-hand Containing Proteins | AT5G27540 | 28.161 | 4.10e-17 | 77.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g02216 | K04392 | - | gmx:100785464 | 376.711 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car06g02216 | 06 | 22774347 | 22777431 | Car06g02216 | 06 | 22774347 | 22777431 | ECH | |
| Car04g01713 | 04 | 17727457 | 17731474 | Car06g02216 | 06 | 22774347 | 22777431 | ECH |