Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02191 ATGTCATATAAGCTTATTTTGCATGGCGCAACCGCCGGTATTGACCGCAAGGATCCACTGTGCACGGTGACTGGAGTTGGTTTAACGAATCCAACATTCCAATTCCAATTCATCATCACAGACATAGATGATGAAGTTCAAGTTAAAGCTACATACTTCACATTCACATGTTCTTTCTCTGCAATGCCAATGCCATCATCGTTTCCAATTCACAACTTCAAGCGATTCAAACCCACCGATCTATGCATCGTCAAACCCATCCTCTCTTCCCAAACCCATCTCCCCGAAGCCGTTTCTTCTCTTGACCTTTTGCACCCCAAAGGCATTCGTTTACCTTCCCGTGTCCTCGCCACTCTCTTGCGCCGTTGCTCCGATACCAAGTCTTACCGACAGGGTAAGCTTGTTCACCTCCATTTGAAGCTCACCGGTTTTAAACGCCCCAACATTCTTCTTTGCAATCATTTGATTCACATGTACTTCCGTTGCGGCGATTATGTTCATGCACGCAAGGTGTTCGACAAAATGGAGGTTAGAAATTTGTATTCTTGGAACAATATGCTTTCTGGGTATGTTAAATTGGGTATGATGAAACAAGCTAGGAGAATGTTCTATCAAATGCCTGACAAGGATTATGTGTCGTGGAACACTATGGTGGTTGGTTATGCACACTGTGGGAGATTTGGTGAGGCTTTAAGGTTTTATGGACTGTTGAGGAGATTGTCTATTGGATATAATGAGTTTACGTTTGCTAGTGTCTTGATTGTTTGTGTGAAGTTGAAAGAATTTGATCTTTGTAGGCAGATGCATGGGCAGGTTTTAGTTGTTGGCTTTTTGTCCAATGTGGTTGTTTCCAGTTCAATTGTAGATGCTTATGCAAAATGTGGTAAAATGGAAGATGCAAGGAGATTGTTTGATGAAATGCCTGTGAAGGATATTCCTGCTTGGACGACGTTAGTTTCTGGATATGCTTTATGCGGGGACATGGAATCAGCTGCTGAACTGTTTAGTCAGATGCCTAAGAAAAATTCCTATTCGTGGACATGTTTGATTGGCGGTTATGAACGAAACTCTCTGGGTCATAAAGCTCTTGGAGTGTTTAGGAAGATGATTAAGCATCAAGTTAGGCCTGATCAATTTACATTCAGTAGTTGCTTATTTGCTTGTTCTGGTATTGCTTCAATGAAACATGGTAAACAAATACATGGGTTTTTGGTGCGAAATAACATCAGACCTAATACTGTTGTTGTTAGTGCTATTGTTGACATGTATGCAAAATGTGGAAGCATCGAGACTGCCAGGCGAGTCTTTAATGTCGTAGGAAATAAGCAAGATGTAGTGTTGTGGAACACTATGATATCAGCACTGGCTCACTATGGCTATGGTAAAGAAGCAGTCATGATGGTCAATGATATGCTGAAATCAGGAGTGAAGCCAAATAGTACCACTTTTGTGGCCATTCTAAATGCTTGTAGTCATTCGGGTCTTGTTCTTGAAGGGCTTCAGTTTTTCAAGTCCATGACTAATGGGCACGGTGTTGCCCCAAACCTAGAACACTATGCACACCTAATTGATCTTTTGGATCGAGCTAGATGTTTTGATGAATCGACGAAGAATCAATTCATGATGGATTGTAAACCAGGTGGTCATGTTTGGTATTCTTTGCTCGATGTATGTAGACTGAATGAAAGTATAGGACTAGGAAAAGAAGCCACCGAATTCCTTGTTAAATGGCAGCCTCGATCTGCTGCTGCTTATGTATTTCTTTCCAGTATGTATGCTGCACTTGTGAAATGGGGATTGGTTGAGGAAGTAAGACTTATTATGGATGAGAGACGCATGAGGAAAGATCGCTCCATTAGTTGGATTGAAATTGAAAATGAGGTTCATTCTTTCACTGTATCAGATGGGTTGCACCCTTTGAAGGAAACAATATACACAGCTTTACGGCACTTAAATATCCAGATAGACGACAATGTCCCATACCTAACTGAAAGATAA 1998 0.4129 MSYKLILHGATAGIDRKDPLCTVTGVGLTNPTFQFQFIITDIDDEVQVKATYFTFTCSFSAMPMPSSFPIHNFKRFKPTDLCIVKPILSSQTHLPEAVSSLDLLHPKGIRLPSRVLATLLRRCSDTKSYRQGKLVHLHLKLTGFKRPNILLCNHLIHMYFRCGDYVHARKVFDKMEVRNLYSWNNMLSGYVKLGMMKQARRMFYQMPDKDYVSWNTMVVGYAHCGRFGEALRFYGLLRRLSIGYNEFTFASVLIVCVKLKEFDLCRQMHGQVLVVGFLSNVVVSSSIVDAYAKCGKMEDARRLFDEMPVKDIPAWTTLVSGYALCGDMESAAELFSQMPKKNSYSWTCLIGGYERNSLGHKALGVFRKMIKHQVRPDQFTFSSCLFACSGIASMKHGKQIHGFLVRNNIRPNTVVVSAIVDMYAKCGSIETARRVFNVVGNKQDVVLWNTMISALAHYGYGKEAVMMVNDMLKSGVKPNSTTFVAILNACSHSGLVLEGLQFFKSMTNGHGVAPNLEHYAHLIDLLDRARCFDESTKNQFMMDCKPGGHVWYSLLDVCRLNESIGLGKEATEFLVKWQPRSAAAYVFLSSMYAALVKWGLVEEVRLIMDERRMRKDRSISWIEIENEVHSFTVSDGLHPLKETIYTALRHLNIQIDDNVPYLTER 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02191 665 Gene3D Tetratricopeptide repeat domain 242 342 IPR011990 GO:0005515
Car06g02191 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Car06g02191 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Car06g02191 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Car06g02191 665 Pfam PPR repeat family 341 388 IPR002885 -
Car06g02191 665 Pfam PPR repeat family 444 491 IPR002885 -
Car06g02191 665 Pfam PPR repeat 285 311 IPR002885 -
Car06g02191 665 Pfam PPR repeat 181 209 IPR002885 -
Car06g02191 665 Pfam PPR repeat 212 240 IPR002885 -
Car06g02191 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Car06g02191 665 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 209 635 - -
Car06g02191 665 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 340 - -
Car06g02191 665 Gene3D Tetratricopeptide repeat domain 353 508 IPR011990 GO:0005515
Car06g02191 665 Gene3D Tetratricopeptide repeat domain 87 241 IPR011990 GO:0005515
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 314 341 IPR002885 -
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 212 242 IPR002885 -
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 152 180 IPR002885 -
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 286 312 IPR002885 -
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Car06g02191 665 TIGRFAM PPR: pentatricopeptide repeat domain 181 211 IPR002885 -
Car06g02191 665 Pfam Pentatricopeptide repeat domain 146 176 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02191 Car-Chr6 22404283 22406948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02191 119 655 Glycoside Hydrolase AT3G49170 30.275 1.29e-79 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02191 - - lja:Lj3g3v3500060.1 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02191 06 22404283 22406948 Car06g02191 06 22404283 22406948 ECH