Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02178 ATGGTAAACCCTTGTGATTTGCAAATCAAAATTAATGATCAGCAGATATTCCTTTTGAAAGAGAAGATTGTATCAAAATACTGTGGAAAGGTGAAAAAAATCTTGAATCAACAAAAGAGATGCCATGGGAAGAAAACGGGGATTGGGATCAAAGATTTCCCCGGTGGCCCAGATGGGTTTGAGCTAGTATCAAGGTTTTGTTACAACAATGGCAAGATCTCAATTACTGTAGCCAATGTGTCTCTTCTCCATTGTTGTGCCATTTATCTTGGAATGACTGAGGAAGTCTTCACCAACAATCTCTTGCAACAAACACAAACTTTTCTTGAGAATATGCATTACTGGAAATGGAATGACATACTTCTAAGTCTAATGAGTTGCCAGTTTTTTTTTACATATGCAGATTGCTATGGTCTTTTGGAGAAGATCATTAGTGCAGTGCTAACAAAGATTGCACAAAATTCAGATGCAAACCTTTTCACTTTCTCCACTTCTTTatcatcgtcatcaccatcatcgacatcaacaccatcttcaccaGAAAGCAACTCTGCCAAGAGATTTTCTTCTTCAACATCAACTACACCAGAAACAACAAAGGCAACCCTGCCAAGCAAAGCATGGTGGTTTGAGGATTTGGCAACTTTACCCCCACAGATAATTGAGAAACTTTTTCAGTGTATTGAAGCATACAAAGCTGATAACAAAAACTTAATCTTTACAAAGTTTCTGTTGCAATATCTGAAAACAGCTACTCAAACCAGAGAGGTTGATTGCAGAAACAGTATTGAATATGCTGCTCTTGCAGAAACAGCTGCTTATGGGGTCATATTTGTCGGTAAGAAAACATTTTCTTGCAGAGGGCTTTTTTGGGTATTAAGGATTGTATCTGGTTTTGGGTTGAGAAAAGGTTGCAGAACTGAACTTGAGAAATTGATTGGTGGGATGCTTGAACAAGCTACACTGGATGATCTTTTGGTTTCTGGACATGATATGGGGATTTACTATGATGTTAACTTGGTGATAAGATTGGTTAGACAATTTGTTGATACCAATAGCTCTGATGGAATGTCTTTACAGAAAATGAAAAGGGTTGGTATATTAATTGACAATTATTTGAAAGAGATATCACCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTTGCAGAATGTTTGCCTGACTCTGCAAGGGATTGCTTTGATGGGGTGTATAGAGCCATTGACATCTATCTTGAGTCTCATCCAAATGTCCCATTTGAGGAAAGATCAAGATTGTGTAAATGTCTTAACTACAGTAAACTGAGCTTTGGAGCTAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAAGGATTGCAATGCAGGCACTTATTTCTCAACAAACAAAAATTCCAACAAGCAACTTTGTAACTGAGAGTCCAAGAAAAAGCCATTCCAAATTTTTTTTGTACAATGAAGCCAGCATAGACAGCTTCTCCCAAGAGAAAAAATACGTGAAACTAAAACTGGAGAGATTGCAATGTAAGACAGTAGAACTGGATAAATTACAGGAAGAAATGAATGGTCAGGTTCCAAATATGTTTAGCCGTAATGTCTTGCTCAGTCCTGCTCGTGCTAGAGCCTCGCCAAGATATTGTTGA 1647 0.3692 MVNPCDLQIKINDQQIFLLKEKIVSKYCGKVKKILNQQKRCHGKKTGIGIKDFPGGPDGFELVSRFCYNNGKISITVANVSLLHCCAIYLGMTEEVFTNNLLQQTQTFLENMHYWKWNDILLSLMSCQFFFTYADCYGLLEKIISAVLTKIAQNSDANLFTFSTSLSSSSPSSTSTPSSPESNSAKRFSSSTSTTPETTKATLPSKAWWFEDLATLPPQIIEKLFQCIEAYKADNKNLIFTKFLLQYLKTATQTREVDCRNSIEYAALAETAAYGVIFVGKKTFSCRGLFWVLRIVSGFGLRKGCRTELEKLIGGMLEQATLDDLLVSGHDMGIYYDVNLVIRLVRQFVDTNSSDGMSLQKMKRVGILIDNYLKEISPDQNLKISKFLGVAECLPDSARDCFDGVYRAIDIYLESHPNVPFEERSRLCKCLNYSKLSFGASKDLAKNPRIPPRIAMQALISQQTKIPTSNFVTESPRKSHSKFFLYNEASIDSFSQEKKYVKLKLERLQCKTVELDKLQEEMNGQVPNMFSRNVLLSPARARASPRYC 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02178 548 ProSiteProfiles NPH3 domain profile. 207 465 IPR027356 -
Car06g02178 548 PANTHER OS12G0117600 PROTEIN 4 522 IPR043454 -
Car06g02178 548 MobiDBLite consensus disorder prediction 165 199 - -
Car06g02178 548 Pfam NPH3 family 208 440 IPR027356 -
Car06g02178 548 Coils Coil 501 521 - -
Car06g02178 548 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 4 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02178 Car-Chr6 22253431 22256207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02178 6 469 EF-hand Containing Proteins AT3G44820 29.051 2.42e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02178 - - gmx:100808259 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02178 06 22253431 22256207 Car06g02178 06 22253431 22256207 ECH