Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02173 ATGTTGGCTGAATATTTTGGCACCATTGGAGTAATAAAGAAAGATAAACGTACAGGGAGACCTAAAATATGGTTATACCGAGACAAAGAGACTGATGAACCAAAGGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTGGCTGCTGTTGAATGGTTTAACAACAAGGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGACGACCAAACATATAATCCAGTAGTTGAGCCGGGTGTTGCTGATAATGTTGTTGGACCGGAGGAAACTGAAGGTGATGCTAATGGTGTTAGTGGAAGAGGTAGAGGGCTAATTGATGCTTCTGGCAAACCATGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCaatgtgaatttcgcttttcgtggtgcgtgtaatcgctgtggaactgctcgcccagctggtgcttctggtgttgcaggaggaggTGGCCGTGGCAGGGGACGTTCTGGACAAGATTCAGGGGGTATTGGCCGTCCAGTTGGTGCAACTGCAGGACTTTTTGGTCCCAATGACTGGCCGTGTCCAATGTGTGGCAACATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAACAAGCCTGGGCACAACGAGGGTGGTGTAAGAGGAGGTCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGCCGCCGGAGGCAGGCTGAAGTAAGATTGATTTTAAGACCACACATGCTAAATAGGCGACTTTGGTTTTATGTATTGTTTTTTTACTGTCAGGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAGGGATTGACAGAGATGCTAGAGAAAAAAGCAGAGACAGAGGAAGGGACTATGATGATGGAGAGCACAGGAGCAGAGAGCAAAATGAAAAGGAGAGGCAAAGCAGTCGTAATAGAGAGAGGGACAGGGGAAGAGATCGAGACAGGGATTATGGGCGAGATCGGGACCGAAATAGACACCGATATTAA 1134 0.425 MLAEYFGTIGVIKKDKRTGRPKIWLYRDKETDEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYNPVVEPGVADNVVGPEETEGDANGVSGRGRGLIDASGKPWQQEGDWLCPNTSCSNVNFAFRGACNRCGTARPAGASGVAGGGGRGRGRSGQDSGGIGRPVGATAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEVRLILRPHMLNRRLWFYVLFFYCQDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIDRDAREKSRDRGRDYDDGEHRSREQNEKERQSSRNRERDRGRDRDRDYGRDRDRNRHRY 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02173 377 ProSitePatterns Zinc finger RanBP2-type signature. 126 147 IPR001876 -
Car06g02173 377 SUPERFAMILY RNA-binding domain, RBD 2 75 IPR035979 GO:0003676
Car06g02173 377 SUPERFAMILY Ran binding protein zinc finger-like 117 154 IPR036443 -
Car06g02173 377 CDD RRM_SARFH 1 70 - -
Car06g02173 377 Gene3D - 120 155 - -
Car06g02173 377 Gene3D - 187 218 - -
Car06g02173 377 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 9 375 - -
Car06g02173 377 ProSiteProfiles Zinc finger RanBP2 type profile. 188 217 IPR001876 -
Car06g02173 377 ProSitePatterns Zinc finger RanBP2-type signature. 192 211 IPR001876 -
Car06g02173 377 SUPERFAMILY Ran binding protein zinc finger-like 183 218 IPR036443 -
Car06g02173 377 Coils Coil 232 252 - -
Car06g02173 377 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 9 375 - -
Car06g02173 377 MobiDBLite consensus disorder prediction 322 377 - -
Car06g02173 377 ProSiteProfiles Zinc finger RanBP2 type profile. 122 153 IPR001876 -
Car06g02173 377 MobiDBLite consensus disorder prediction 154 180 - -
Car06g02173 377 Pfam Zn-finger in Ran binding protein and others 123 152 IPR001876 -
Car06g02173 377 Pfam Zn-finger in Ran binding protein and others 191 217 IPR001876 -
Car06g02173 377 SMART zf_4 124 150 IPR001876 -
Car06g02173 377 SMART zf_4 190 214 IPR001876 -
Car06g02173 377 MobiDBLite consensus disorder prediction 87 109 - -
Car06g02173 377 Gene3D - 1 68 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02173 Car-Chr6 22214393 22219242 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02173 - - gmx:100780819 511.531