Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02120 ATGGGAGAAGAAGGTATAGGGAGAGGTGTGACAAAGAAGGTGAACCCTGGGAAGGCTACTATATTGAGTCTTGGCAAGGCTTTCCCTCACCAGTTGGTGATGCAAGAGTATTTAGTTGATGGATATTTTAGGGACACTAATTGTGACAATCCTGAGCTTAAGCAGAAGCTTGCTAGACTTTGCAAGACAACCACAGTGAAAACAAGGTATGTTGTTATGTCTGAGGAGATACTGAAAAAGTACCCGGAACTTGCCGTTGAAGGCGCTGCCACTGTTAAACAACGGCTAGAGATATGTAACAAGGCAGTGACACAAATGGCGATTGAAGCTTCCCAAGTTTGCATAAAGAACTGGGGTAGATCTTTATCAGACATAACTCATGTGGTTTATGTTTCGTCTAGTGAAGCTAGATTACCTGGCGGTGATCTTTACCTATCCAAAGGACTTGGACTGAACCCTATCATTCAACGAACCATGCTCTATTTTGCCGGATGCTCAGGAGGTGTGGCTGGTTTACGTGTTGCGAAAGACATAGCTGAGAACAACCCTGGAAGCAGGGTGTTGCTTGCTACTTCTGAGACTACAATTATTGGGTTCAAGCCACCAAGCGCTGATAGACCCTATGATCTTGTTGGGGTGGCACTCTTTGGTGATGGTGCTGGTGCCATGATAATCGGTTCAGACCCAGTATCAGAAACGGAGACACCGTTGTTTGAGCTTCACACTGCAGCTCAAGAGTTTTTACCTGACACAGAGAAGAAAATTGATGGGAGGCTGACGGAGGAAGGGATAAGCTTCAAGTTAGCAAGGGAACTTCCTCAGATAATTGAAGACAATGTTGAGGGATTCTGTGACAAACTAATTGATGTTGTTGGGTTGCAGAATAAGGATTACAATAAGTTGTTCTGGGCTGTGCATCCAGGAGGGCCTGCGATACTGAATCGCATGGAGAAGCGGCTTGATTTGTTGCCCGAGAAACTGAATGCCAGTAGGAGAGCTCTCATGGACTATGGAAATGCTAGCAGCAATACCATTGTTTATGTGCTGGAGTATATGATAGAAGAGGGCCTGAAGATTAGAAAGGAAGGAGGAGGAGATCCTGAATGGGGCTTGATACTTGCTTTTGGACCTGGAATTACTTTTGAGGGGATTCTAGCAAGGAACATGTGTGCTTGA 1176 0.4515 MGEEGIGRGVTKKVNPGKATILSLGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLARLCKTTTVKTRYVVMSEEILKKYPELAVEGAATVKQRLEICNKAVTQMAIEASQVCIKNWGRSLSDITHVVYVSSSEARLPGGDLYLSKGLGLNPIIQRTMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPVSETETPLFELHTAAQEFLPDTEKKIDGRLTEEGISFKLARELPQIIEDNVEGFCDKLIDVVGLQNKDYNKLFWAVHPGGPAILNRMEKRLDLLPEKLNASRRALMDYGNASSNTIVYVLEYMIEEGLKIRKEGGGDPEWGLILAFGPGITFEGILARNMCA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02120 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 389 IPR011141 GO:0009058|GO:0016747
Car06g02120 391 PIRSF PKS_III 7 391 IPR011141 GO:0009058|GO:0016747
Car06g02120 391 Gene3D - 237 389 IPR016039 GO:0016746
Car06g02120 391 CDD CHS_like 19 385 - -
Car06g02120 391 Gene3D - 7 236 IPR016039 GO:0016746
Car06g02120 391 Pfam Chalcone and stilbene synthases, N-terminal domain 12 229 IPR001099 -
Car06g02120 391 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 389 - -
Car06g02120 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 388 IPR012328 -
Car06g02120 391 SUPERFAMILY Thiolase-like 16 229 IPR016039 GO:0016746
Car06g02120 391 SUPERFAMILY Thiolase-like 236 387 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02120 Car-Chr6 21645113 21646618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02120 87 376 Miscellaneous Gene Families AT4G34250 23.988 6.69e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02120 - - vun:114168705 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02120 06 21645113 21646618 Car06g02120 06 21645113 21646618 ECH