Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02099 atGGGTACCAATAACATTAATACTGCTACTGCTCAATCCATTGTTGCTCCCACAAAACACTCTCTTCCTCTTCCTAAGACCGTTGATTCTCAATCCGTTCTCAAAAGGTTGCAGTCTGAATTAATGTCTTTGATGATGAGTGGTGAGTCTGGTATATCTGCTTTTCCAGAGGAGGACAACATATTCTTATGGAAAGGAACAATAACAGGAAGCAAAGAAACAGTATTTGAAGGCACAGAATACAAGTTATCACTTTCCTTTCCTAATGATTACCCTTTTAAGGCTCCTAAAGTCAAGTTTGAAACAACTTGCTTCCATCCCAATGTGGATCTTCATGGCAATATATGCTTGGATATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTTTGCTATCCATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCTCTAAATACACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTATACAAATCTCCAAGTGCTGAAGTCTTTTGA 543 0.3886 MGTNNINTATAQSIVAPTKHSLPLPKTVDSQSVLKRLQSELMSLMMSGESGISAFPEEDNIFLWKGTITGSKETVFEGTEYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLYKSPSAEVF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02099 180 Gene3D Ubiquitin Conjugating Enzyme 26 177 IPR016135 -
Car06g02099 180 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 177 IPR000608 -
Car06g02099 180 PANTHER BNAC06G03670D PROTEIN 17 175 - -
Car06g02099 180 SUPERFAMILY UBC-like 28 172 IPR016135 -
Car06g02099 180 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 17 175 - -
Car06g02099 180 CDD UBCc 35 172 IPR000608 -
Car06g02099 180 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Car06g02099 180 Pfam Ubiquitin-conjugating enzyme 36 170 IPR000608 -
Car06g02099 180 SMART ubc_7 35 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02099 Car-Chr6 21392953 21395127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02099 34 141 Miscellaneous Gene Families AT3G17000 31.858 7.13e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02099 K06688 - csv:101208947 297.36