Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01908 ATGCGCGCCCCTACTGCAAGAAAACTATGTACTCTCAGCTCCTATTTCCGTTCACATTTACACAACAACAATCCCAAAAACAATGTTTCCTCTTTCAAAACACCACTTCAATCTGAAACCGAACACCATTTTGATTCTGACTTGTACCTCTCAACCCTCAAACTCAATGTCGTATCCCCCCCAGTGTTGTTTCTTTCTGTAGCTCCTCCGGTAGAGAAGCTTGTTTATGAGGAAGTTGATGATGAAGAAAAAGAGAAAAGCATATTGGAAATACCACGAATACTAGACTTTTCTCATAGCGATGCATCAATTAAACGAAAGGAGGTTTCACGTGAGAGGAAACAAAAGTGGATTTTCAAATACACCGGTGATGACCGATCTGACAGGTTACTCAAAATGTGTGGAAGAAAACTAGGAATAGATGCTACTGTTGATGTGTTTGGCCGATTGGGTCGAGAAACAGGTCTGAAAGAGTACAATGCATTGATCAAATTGTGCATAAAGAAGGCTAGGTCGACTAATGATGAACACATTACTATGGAAGAAATGAGTAAGACTTTTCACCTTTTAAAATTAATGAGGGAACGTGGGTTTCAGATAGAAGAGCAAACATATCGCCCAATTCTCCAGTATATAATTGACATGGGCCTTGTTCAAGAATTTCAAGTTTTCTATGATGTTATCCAAGCTGGTAATCCCAGTTCAATTTCACGACTGGGTTACTATGAAATGATGCTGTGGATAAGGGTCAGCAATGAAGAAATGATCCGGGATATTTGTGAATACATTACAGTTGAAGAGAGTGAAGACACTTCTGCTTTACGAGAAAGTTACCTATTGGCTCTTTGTGAAAGTGATCGCAAGACACAGATATTGGACGTGTTGAAAAATATAGAAGTAACAAAGCTTACATCTACAAAATCTATATCAAATATATTCCAATCGTTAGGGAGGCTGCTGCTGGAATCTGATGCAGAGAATTTACTTTTGGATTTGAGAGCACGCGATCATGATGCAGATAAGATTTCAAACTTCATTGCTAGTTATGCACTTAGCATTCCAAATTTAGTGGTTGAGGATATCATCTCAAAAATCGAGAATTTGCATGATGTATTGGAAGTTTTGCCTTCATTGTCGTCGTATGAAAAGCTCGTTTTATATTGCTGTGATATGCACAAGGTGGATGTAGCTCTTGATATTGTTGATAAAATGTGTGAAACAGGCTTTATGCCGTCTTCTCAGGTGTTACAATCCATATTACAGATTTGTGAGGAAACTTTTGATTATATATTGGTCCATCGAATCTATTCCATCATAAGTCGCCACCATTTGGAGTTAAATGGTGAAATATGCAGGTGTTTGGTACAGTTTTGTGTAAGGACAAAAGATTTTGAACGTGCATACAAGATGGTTGATGAATTGCGGGAAATGAATTTCAAACCTACGCCAACCATGTACAATGCCATAATGGCAGGATATTTTCGCGAGAAAAACATCAGAGGTGGAGTGAGGGTCCTCAAACTCATGCAAGATGCCAATGTGAAGCCTGATTCACAGACTTTCAGCTATTTGATTAGCAATTGTGAAACAGAAGATGATATAAATAAGTATTATGAAGAACTGAAGAAATCTGGAATCCACCCAACAAAACAAATTTTTATGTCCCTTATTAATGCATATGCAGCTTGCGGCGAATTGGAGAAGGCAAAACAGGTAGTTCTTGATCCATGCGTACCATTGAAGAGCTTACATGAAATTAAGAGTGTTCTTGTCTCAGCTCTTGCATCTCACGGGCAATTGTCTGAAGCACTTGTTGTCTTCGAGGAGATCAAGAAAGCTGGACACAATTTGGAGCCAAAAGCTGTTATAAGTCTCATTGATGAGTTACGTCATTTAAGTGGAGAGTTGGAGGGGTTGCTTCATCTGCTCGAAGAGTTTAGTGATCTAGACTACTGGGTTGACGGTTGCTTCAGAGTTATCCAGTACTGTGTTCAGAACAATCACTTAAGCTCTACTGTTGACCTGTTCAAGCAACTCAAGGATCAGTTCGAAAGTGATGAAACAGTAATGGAAGTTCTTTTCGATGCAGTGTATTCTCTAATTGCGGGATCCGAGTCCGCACATTTGCAGTTTGGACTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGGCTTGTTCCTTCACGGCAGTGTCTCGATTTTCTTCTAAGCGCTTGTGCCAATGCAGGAGATTTGAATAATGCTCGTTTGATTTGGAGAGAATATGAGATTGCTGGATTTCCTTATAATGTATTAAGTTACTTGAGGATGTATCAAGCACTTTTGGCATCAGGAGATCACAGATCTGCTGACTTTATACTAAAGAAAATTCCAAAAGACGATGCCGAGGTTTGTTCTGTCATTTTAGCATGTCAAAAAACTTATGGCGATAATGTTAAATCTGTAGGAGGGGagaagaaaaagaatattaaatctgtaggtgaggagatgaagaggaagaagaagaagaagaaaaagaGTAAATCTTGA 2529 0.382 MRAPTARKLCTLSSYFRSHLHNNNPKNNVSSFKTPLQSETEHHFDSDLYLSTLKLNVVSPPVLFLSVAPPVEKLVYEEVDDEEKEKSILEIPRILDFSHSDASIKRKEVSRERKQKWIFKYTGDDRSDRLLKMCGRKLGIDATVDVFGRLGRETGLKEYNALIKLCIKKARSTNDEHITMEEMSKTFHLLKLMRERGFQIEEQTYRPILQYIIDMGLVQEFQVFYDVIQAGNPSSISRLGYYEMMLWIRVSNEEMIRDICEYITVEESEDTSALRESYLLALCESDRKTQILDVLKNIEVTKLTSTKSISNIFQSLGRLLLESDAENLLLDLRARDHDADKISNFIASYALSIPNLVVEDIISKIENLHDVLEVLPSLSSYEKLVLYCCDMHKVDVALDIVDKMCETGFMPSSQVLQSILQICEETFDYILVHRIYSIISRHHLELNGEICRCLVQFCVRTKDFERAYKMVDELREMNFKPTPTMYNAIMAGYFREKNIRGGVRVLKLMQDANVKPDSQTFSYLISNCETEDDINKYYEELKKSGIHPTKQIFMSLINAYAACGELEKAKQVVLDPCVPLKSLHEIKSVLVSALASHGQLSEALVVFEEIKKAGHNLEPKAVISLIDELRHLSGELEGLLHLLEEFSDLDYWVDGCFRVIQYCVQNNHLSSTVDLFKQLKDQFESDETVMEVLFDAVYSLIAGSESAHLQFGLDLLWAIKDELGLVPSRQCLDFLLSACANAGDLNNARLIWREYEIAGFPYNVLSYLRMYQALLASGDHRSADFILKKIPKDDAEVCSVILACQKTYGDNVKSVGGEKKKNIKSVGEEMKRKKKKKKKSKS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01908 842 PANTHER OS02G0132600 PROTEIN 7 836 - -
Car06g01908 842 TIGRFAM PPR: pentatricopeptide repeat domain 450 482 IPR002885 -
Car06g01908 842 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Car06g01908 842 Gene3D Tetratricopeptide repeat domain 535 654 IPR011990 GO:0005515
Car06g01908 842 Gene3D Tetratricopeptide repeat domain 657 842 IPR011990 GO:0005515
Car06g01908 842 Pfam Pentacotripeptide-repeat region of PRORP 383 543 IPR033443 -
Car06g01908 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Car06g01908 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Car06g01908 842 PANTHER OS02G0132600 PROTEIN 7 836 - -
Car06g01908 842 MobiDBLite consensus disorder prediction 823 842 - -
Car06g01908 842 Pfam PPR repeat 589 614 IPR002885 -
Car06g01908 842 Pfam PPR repeat 553 572 IPR002885 -
Car06g01908 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Car06g01908 842 Gene3D Tetratricopeptide repeat domain 431 534 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01908 Car-Chr6 19000774 19022303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01908 346 645 Glycosyltransferase AT1G05670 22.659 1.70e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01908 - - cam:101502375 1578.92