Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01890 ATGCTTGCAATACGAAGGCTCAAAACAGGACCAGATCTCCCCTATGTTTTATGTTTCATGATTGCCAATTGCAATTATGGCACAGCCCAAGTTTCAAATAACAGAAATCTCCAGTCTATTGTGAAGTTTGTTAGCCCTTGTTTAGCCAAGTCAAGTTCAAAGGCATTTCTACTAGGATTTAAGAATACATTTTTCCTTCAAGGACTATATATCTCAAGTATGGCCGAAACAATCCTGGTCCAGGCTCAAGACCCTGCCAAAGTTAGTATGGAAATACAAAATGCTATCAATGGCAACAAATTAGATTATTCATGGAAGTTACTTGAGCAGCATAAGCACATGGAGGGATTTCCCAGAAAATCTCTCTTCAATAAGATTATAACTAGCTATGTAGAAAGCCTTGATATGCAATGGCTACAAAAAGCTTATGAATTGGTACAACGTGCTAGTGAAGATGGTAAAAAAGACTTGTTAGAGAAGGAGCTGCTTATCTACCTTAGCATTGGCCTTGCAAAAGTCAGGCTACCAGTTCTGGCATCAACTATTTTAAGAAAGATGATTGATATGGAGCATTTTCCTCCTGTTACTGCTTGGTCTGCAGTTTTGGCACACATGTCACAAACAGCTGATGGAAGTTTCCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTATTCCAATACAACAGAGTGGATCCTCGTAAAAAGAGTAATGCACCTCTGATTGCCATGAAACCAAATGCCAATGCTTTTAATATTGCATTGGCAGGGTGTCTTGTATTTGAGAAATCTAGGAAAGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCTGACGCAAACTTGCTGATAACAATGGCACGTGTATATGAGAGAAATGGACGAAGAGAAGAGCTTATGAAGCTGCAAAGGCATATTGAGGAAGCTTCAAACCTAACTGATATACAGTTCCGACAGTTCTATAATTGTTTGCTTACATGCCATTTGAAATTTGGGGATCTTGATTCTGCATCCAACATGGTTTTAGAAATGCTTAAAAAAGCAAAGGAAGCAAGAAATTCTCTTGCATCTGCTAAATTCATGATAGACGCAGCTAAAATTGATCAGAACTATTCTCCTAGATCAGCTTCTGTGCATATTTTGAGCAACAGTAAAGATTTGGAGAGTGTAAAAAATGACCAGCTAATAAGAAATACTGCCTTATCTTATGAGGAGTTCTCCAAAGATCGAAACTTCTTAAAACTTGAAATGGAGTCAAAAGCTGTTCTTGGTTCTTTATTTGCTAAATTGCAGATGCAGGTTGATTTGATTACAACCGTACATGGTATACTACAACCAACTGAAACAATTTATGTGAAATTAGTCAAATATTTTTTAGAGGCTGGTAAGACCAAGGACTTGGCGGTGTTTCTTCTCAAGGCAGAAAGAGAAGACTCCCCATTTTCCAATGACAATTCAGCCTTGGTTCATGTTATTAATTCGTGCATTTCACTTGGATGGTTGGACCAAGCACATGATCTTCTTGATGAGATGCGACTAGCTGGAGTTAGAACTGGTTCATCTGTATATGCTTCTCTTTTGAAAGCATATTGTGCGGCAAATAGGGCTGCAGATGTGACATCACTTCTGAGAGATGCTAGGAAGGCCGGTATCCAGCTTGGCTCTAGCTCTTATGAGGCAATGATCCAATCCAGGGTGCTCCAGGAAGACACACAGGGAGCACTCCAACTTTTTAAAGAGATGAAAGAAGCTAGGATTCCAAAAGTTAGTCATCAGTACTCTGGCATGCTGACTAAAAGTGTTACAGAGACAGATGAAGCTGCACTGGTGACAAAGCTGGTGCAGGAAATCAAGGAAGGACAGAAAGTGGATTGTGGAGTTCATGACTGGAATAATGTAATCCACTTTTTTTGTAAGAAGCGACTAATGCAAGATGCAGAAAAGGCTCTAAAGAAGATGAGAAGCTTAGGTCACTCACCTAATGCACAAACTTTCCATTCTATGGTCACTGGGTATGCTGCCGTCGGGGGGAAATATCTGGAGGTAACAGAATTGTGGGGTGAGATGAAAGCGCTTGCTTCTTCGTCCTCCATGAAGTTTGATCAGGAACTTCTTGATTCTGTGTTGTATACATTTGTGAGGGGTGGATTCTTCACTCGTGCCAATGAAGTTGTGGCAATGATGGAAAAGGGAAAAATGTTTATTGACAAGTACAAATACAGAATGCTATTCTTGAAATATCACAAAACACTTTACAAAGGCAAGGCTCCGAAATTTCAGACGGAATCACAACTAAACAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATCGGCTTGGTTTGA 2355 0.3987 MLAIRRLKTGPDLPYVLCFMIANCNYGTAQVSNNRNLQSIVKFVSPCLAKSSSKAFLLGFKNTFFLQGLYISSMAETILVQAQDPAKVSMEIQNAINGNKLDYSWKLLEQHKHMEGFPRKSLFNKIITSYVESLDMQWLQKAYELVQRASEDGKKDLLEKELLIYLSIGLAKVRLPVLASTILRKMIDMEHFPPVTAWSAVLAHMSQTADGSFLAAELILEIGYLFQYNRVDPRKKSNAPLIAMKPNANAFNIALAGCLVFEKSRKAEQLLDMMPRIGVKADANLLITMARVYERNGRREELMKLQRHIEEASNLTDIQFRQFYNCLLTCHLKFGDLDSASNMVLEMLKKAKEARNSLASAKFMIDAAKIDQNYSPRSASVHILSNSKDLESVKNDQLIRNTALSYEEFSKDRNFLKLEMESKAVLGSLFAKLQMQVDLITTVHGILQPTETIYVKLVKYFLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINSCISLGWLDQAHDLLDEMRLAGVRTGSSVYASLLKAYCAANRAADVTSLLRDARKAGIQLGSSSYEAMIQSRVLQEDTQGALQLFKEMKEARIPKVSHQYSGMLTKSVTETDEAALVTKLVQEIKEGQKVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAAVGGKYLEVTELWGEMKALASSSSMKFDQELLDSVLYTFVRGGFFTRANEVVAMMEKGKMFIDKYKYRMLFLKYHKTLYKGKAPKFQTESQLNKREAALAFKRWIGLV 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01890 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Car06g01890 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Car06g01890 784 PANTHER BNAC05G43320D PROTEIN 15 783 - -
Car06g01890 784 Gene3D Tetratricopeptide repeat domain 574 776 IPR011990 GO:0005515
Car06g01890 784 Gene3D Tetratricopeptide repeat domain 86 394 IPR011990 GO:0005515
Car06g01890 784 Pfam PPR repeat family 631 676 IPR002885 -
Car06g01890 784 PANTHER OS10G0422566 PROTEIN 15 783 - -
Car06g01890 784 Gene3D Tetratricopeptide repeat domain 419 573 IPR011990 GO:0005515
Car06g01890 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Car06g01890 784 Pfam PPR repeat 324 350 IPR002885 -
Car06g01890 784 Pfam PPR repeat 494 519 IPR002885 -
Car06g01890 784 TIGRFAM PPR: pentatricopeptide repeat domain 633 665 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01890 Car-Chr6 18873910 18877414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01890 525 746 Miscellaneous Gene Families AT4G11690 20.982 1.32e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01890 - - mtr:MTR_4g081540 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01890 06 18873910 18877414 Car06g01890 06 18873910 18877414 ECH