Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01883 ATGTTTGGATCATCTTTATTTCTTGGAATTCTCCATTGTGATATTAGAATTAAAGATTTTCTCTCAATTTTAATTTTTAAAATGCACACTTTGTTGAACTATGTTTCCCATAATTGGAACTATTGTGCCACTCTTACAAGTTACTATAATTATGAACTAGTGAAGCAGGGTTTGAACTGCAATATTCAAAGTGGTGTGAAATTGTGCAAAGATGAAATCATTGTTGTGATGGAAAAGATGGGATTAAGAGTGAATTATGATGAGGATTGTATAGTGGAGTTTGATGATCAAGAAGAAATTAGTCATATGTTTGAAAATGGGGTTAGTTTGGAAGAGGTGAAGGAAGCATTTAATGTGTTTGATGAAAACAAAGATGGCTTTATAGAAGCTACTGAGTTGCAGAGGGTTTTGTGTTGTTTGGGATTTCAGAGAGACTTTGTGGAATGTCAAAAAATGATTAACGTTGTTGATCAAAATGGAGATGAATTAGTTGATCACTATGAGTTTGTTAAGTTGATGGAACAGAGTTTTGGATGA 537 0.3259 MFGSSLFLGILHCDIRIKDFLSILIFKMHTLLNYVSHNWNYCATLTSYYNYELVKQGLNCNIQSGVKLCKDEIIVVMEKMGLRVNYDEDCIVEFDDQEEISHMFENGVSLEEVKEAFNVFDENKDGFIEATELQRVLCCLGFQRDFVECQKMINVVDQNGDELVDHYEFVKLMEQSFG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01883 178 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Car06g01883 178 Gene3D - 108 176 - -
Car06g01883 178 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 20 177 - -
Car06g01883 178 CDD EFh 112 173 IPR002048 GO:0005509
Car06g01883 178 PANTHER CALCIUM-BINDING PROTEIN CML46-RELATED 20 177 - -
Car06g01883 178 SUPERFAMILY EF-hand 68 175 IPR011992 -
Car06g01883 178 Pfam EF-hand domain pair 111 174 IPR002048 GO:0005509
Car06g01883 178 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Car06g01883 178 SMART efh_1 112 140 IPR002048 GO:0005509
Car06g01883 178 SMART efh_1 148 176 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01883 Car-Chr6 18812751 18813427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01883 68 177 EF-hand Containing Proteins AT5G39670 41.593 4.65e-23 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01883 K02183 - gmx:100526868 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01883 06 18812751 18813427 Car06g01883 06 18812751 18813427 ECH